Array 1 117367-118589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNKJ010000006.1 Phocaeicola vulgatus strain D40t1_170626_E11 NODE_6_length_119332_cov_23.8373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 117367 33 97.0 34 ................................T TGGCCTTGCTCGGGGTCAGGATGGCCGTCAGGTT 117434 33 97.0 35 ................................A CCACCATCGCCACATGCTCGCGGGGCGTGGCCGTC 117502 33 97.0 33 ................................A GCCGTGTCCATCTTCTCCACCACGCTTTCCAGC 117568 33 97.0 34 ................................A AGTTCATCCTGTTGCTCCCGGGTAAGTCCGTTAT 117635 33 100.0 32 ................................. TTCCAGCGCTGAAGATACTCTGTTGCACGAAT 117700 33 100.0 32 ................................. CGGAATAGCAATTTGCCAATAGCATGGCAAAA 117765 33 100.0 32 ................................. TTAACGGAGATAATAAATTTTTGCATAATTGT 117830 33 97.0 34 ................................T GGGAAGCAGATCCGATCGCATTGCCAGCAAGAGA 117897 33 100.0 32 ................................. TTGGACTGATCCAATAATGCAGATCGGCGGCC 117962 33 100.0 33 ................................. TTCCAACGCTGAAGATACTCTGTTGCACGAATT 118028 33 97.0 33 ................................T TCTCATACTCTATGCCTGTTTTAATGATAAACA 118094 33 97.0 33 ................................A TAAGAATCGACATCTTTCTGTTTATGCTTAGAA 118160 33 100.0 34 ................................. CATAATGAAGATAAACCTCGAGCGCGATTAGACT 118227 33 97.0 33 ................................A ATCCGATATGTTCGGGTTAGCGGAACGTACGAT 118293 33 100.0 33 ................................. AATAACCTGACTGGCCAACACCAATATTGCGAT 118359 33 97.0 32 ................................T AACTGGGAGCAAATATACAAACTATTTTCATA 118424 33 97.0 32 ................................T GGGAAGCTTGCGCCGGATACATTATGGACGTT 118489 33 97.0 33 ................................A ATGACGAGGTGAATACGTGTATAGACAACCATA 118555 33 90.9 0 ....................A.........G.A | TA [118574] ========== ====== ====== ====== ================================= =================================== ================== 19 33 97.8 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACC # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 36969-36231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNKJ010000036.1 Phocaeicola vulgatus strain D40t1_170626_E11 NODE_36_length_47779_cov_23.114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 36968 47 97.9 30 ...A........................................... AAGTTTTTAAAAGTCCTTCAGTACTTTTAT 36891 47 100.0 30 ............................................... AGTCCGTTTGAGAATGAATGATACTCCCGT 36814 47 100.0 30 ............................................... TTCTTTCTTTGTCTGAAAGTTTGACGCAAG 36737 47 100.0 30 ............................................... AAACAAAATTAAGATACTCTATTGATCAAC 36660 47 100.0 29 ............................................... TGTGGCATATAATAGAAAAACTCATATAA 36584 47 100.0 30 ............................................... CGCCTTCTGTTTCTTCTGTTTTGGCAATTA 36507 47 100.0 30 ............................................... AGGAGGTGAATAATGAATAGCGTACAGACA 36430 47 100.0 29 ............................................... TTAATAATAGTTGTAACTTCTAACGACGG 36354 47 100.0 30 ............................................... AAGTGAACTGGACCATATTCGCCCACAGCG 36277 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : AGAATATATGTTACAAACTAATTACCAATTAGTTACACGCATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTCAAATAATTCCAATTGCTGTCCTAGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //