Array 1 2105790-2107677 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHJC01000001.1 Yersinia pseudotuberculosis strain NCTC8580, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2105790 28 100.0 32 ............................ TTGCCGGCATGGATGAACAAGGGCGAACCCGT 2105850 28 100.0 32 ............................ GGTGACGGCGTCAGCACCTACCAATGTGCTGA 2105910 28 100.0 32 ............................ AATAAAAAAGGCCGCGTTATGCGACCTGATTG 2105970 28 100.0 32 ............................ TGCACAAATTAGCTGTTGCATGGGATACTCCA 2106030 28 100.0 32 ............................ CCGTCCGGGCAGCCCGTGACTGGCTGGGAGAA 2106090 28 100.0 32 ............................ AATACTTCAGAGAATGCCTTGTTTGTGGTGAA 2106150 28 100.0 32 ............................ ACAGTGCGCACCCCCTCAATGACTGTGAAGTC 2106210 28 100.0 32 ............................ ACAGTGCGCACCCCCTCAATGACTGTGAAGTC 2106270 28 100.0 32 ............................ TAGTCGCTGTGCGCCCCTAGCCAGCCCTGCCA 2106330 28 100.0 32 ............................ AACTTGCACAGTAGATAATGTTGAATCAAGAA 2106390 28 100.0 32 ............................ GATGTGCAATGACGATGACGGAATATTGATTT 2106450 28 100.0 32 ............................ AGAGCAATTTAAGAAACTGTATTCAGATGGCA 2106510 28 100.0 32 ............................ GTGTACTCAAGACAGCTAACGAATTAATCAGC 2106570 28 100.0 32 ............................ TGCTAAGTGTTCCAAGAATTGCGCGTGCGCCT 2106630 28 100.0 32 ............................ TGGACGCTCTCTGCCAGCCGGTGTGACTGTTG 2106690 28 100.0 32 ............................ TCACAGCAAAAAACCGCCTTGCGGCGGCTCTC 2106750 28 100.0 32 ............................ TCGACCGTCCCCACTTTTCAAACTACAATGGG 2106810 28 100.0 32 ............................ GTACATTACAAAGGTCGCAGGAGGGACCCATT 2106870 28 100.0 32 ............................ AACTAACAGCGGCAGGGGAATTGCGCAATGAT 2106930 28 100.0 32 ............................ AATGGCAATGACCGGGGCGTCTGGACGATTCC 2106990 28 100.0 32 ............................ CTGTCGTAGTATCGAACTCCACCACGTATTCC 2107050 28 100.0 32 ............................ CCATCTGTTGTCTGATTTCTTCAAATATCAAA 2107110 28 100.0 32 ............................ GACGTGGGGCGTACCGAAGAAGCATATCGAAA 2107170 28 100.0 32 ............................ TAGCTCAAATAAATACCTTGCCAACGGCTATT 2107230 28 100.0 32 ............................ GTATTCAGGGCACTGCTTATCACGCACCGAAT 2107290 28 100.0 32 ............................ AGAGATATTAAGAGGGATGGGCTGATACTGGT 2107350 28 100.0 32 ............................ GTTGCTGCCAGAGGTCACTGTAGCCACGGTGG 2107410 28 96.4 32 ..................T......... GTCCGGTGCCGTGAAATCGGCGTACCAAACGG 2107470 28 100.0 32 ............................ CAAAACCGGCGCAATGATAGATGAAATCGCTA 2107530 28 100.0 32 ............................ CACGCCAGTTATAGTCGTAGAACCCTTTATTA 2107590 28 100.0 32 ............................ GTCATAGAGCGGCGGCGCGACAATCACAAAAG 2107650 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCGGCCTTGTTGGCACAACGACTCTACTGGCAGCATTTTGCTACGGTGATAGCGCATGCTTTTGCGCTTAACCCGCAACTTAAATCGTTGGCAACTGCAGAGACACTATTGTGCCGTTGCGAGGATGTGGCTTTAGGGCAGATTGTCGGGCAACGGGATTGGGTGGCCGCCAAGCTGGCTAGCCGCTGTGGCATGGGGGCTTGTCAGGGGAAAGTCTGCGCCACCGCTGCCCGTTATCTGTTTGGCTGGCCGTTGCCAACCCCCAGAGTGCCATTGACGCCTGTCAGGCTAGAAACATTGGCGGCGACTCCGCCGTTCTCCTCAGAAAAATAATCATTAGGATCCGGTTACATCCCCACAGGTTCTTGTGACCCTCTTTTTTTCACTATTACTAACTTATTGATTTTTATACTGCTCAGGTGTTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCAATTGCTAATTGATAAACATCAGGTTATCCGTATTATCTTACT # Right flank : ATGTACGTCGCCTTACGTTAGTTGGGGAGTGGCTTCTGGCTTCGGTGTGGTTGTTTTAAAATGATCCCTTTATTCTGAGTGTTTTTGCTTTCTATGGGCCAACTAACTTGAACTGTGCCAATCATAGACAAGACACCTTGCGGTAATACACTGCCATACGTGAAGTTACTAGCACTTACGCGAATTTAAAACCGGCCACAGCACATGATGAGTATGGGGGTGTGTGAGTAAGGCGATAAAATACAGCGCCGGGCTTTCTTGCCCGGTGTGAACAAAACCGCCTCTAATGGGGCAAACCAGACTCTCTATCACAGTTTAAACCTATCTCGCTCTTTGTATTTCGCAATGAGAAATGTGATCAGTGCTATCAATGCGACCAGTAAAAATAGATAGCCTAGGGGGATCAAGAAGAAAGGTTCATGTAAGACACCATCCTCGTCAATATAGCTGCCCGCCAAAGCCTTACTAATAAAACAGCCAAGCCCGGTGAGTCCAAAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2177053-2177802 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHJC01000001.1 Yersinia pseudotuberculosis strain NCTC8580, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2177053 28 100.0 32 ............................ ATTCCCATAAGTACGTTTGCCGGTACGCCGTG 2177113 28 100.0 33 ............................ CGTAACGATAAGCGCTTGGCTCTCACAGCAGCA 2177174 28 100.0 32 ............................ TGGTGAATAGCATCAGCTAAAGCATTGTGTCT 2177234 28 100.0 32 ............................ TCCATAAATGATTTACGCTTTTTGGCTGCTGA 2177294 28 100.0 33 ............................ CGCTGGGTTAGACAAGGAAGCTCGGCGGTGCTG 2177355 28 100.0 32 ............................ TGAACGCGGCGGCGGTAACGCTGACAAGGGGA 2177415 28 100.0 32 ............................ CAAGGGAACAACTGGTTTTCGGCTGGATACCA 2177475 28 96.4 32 A........................... CTAGACTGGTGGGAACAGCAATCGGCAGAGGC 2177535 28 100.0 32 ............................ CATATGAGAATGGATGCGGGGGCCAACCGCAC 2177595 28 100.0 32 ............................ AGTCGGAAATCTCCCGCGCTTCACGAATGGGG 2177655 28 100.0 32 ............................ ATTACACACACGTCATCAAGTTCCCCGTATTC 2177715 28 100.0 32 ............................ TCCATGACACCGGCACGCGTCAACACAGAAAT 2177775 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTTAGTGATTCTGATGGCAGTTATATTTGATGCCATCATTTTTATACCTGCAGCGTTAATATTTTACTTCCTCGGAAGGTCAGCCAAAAAGTCTAAGACTGCAAACGTACTCAATAAGCTGGCAGTAGGATCGCTCATTATCGGCACCATATTTGCAATCGTTGTAATCGATGCATTTAGTTAGCCACAGCCATAAATACCTAGCCGCCTACGGGCGGTTTTTTTACGCCTAAATTTCAGCACAGCGCGGCCTTGCAAAGTGACTACATAATGTCACTAAGGGATCATCATGGCAGTAAAAGATACGGGCTGGAGAAGTATAGAGCATAATTATGCCGTTTAAGCCTCGATCAGAGAACGTAGTGTTTTGACCCTATTTTTTTAGCCTCTTCTAACTCATTGATTTTATACCGTAGCTACAGCAGGATAAAAAAATCATTTTTTGCCCTTTAGCTAAATAGTTATTTTACAAACAGTATCTTACCCGTATTATCTTACA # Right flank : AATTGGATAGTCACTCAACTGACAAATTCTGCGTTGCAAAATAAACGTGTGTCAGATTAGGTTTAGACTGCAGTATTTTGTGCTGACCATACCAGATGATACCAGTTGCACGGAAAGGGTATCATCAACGCTATGCCAGATAGATAACATCAGGTAATCTCCCTACATGCCGGGTGGAATGGGTGGAAAGGGTGTGGACAGAAAATTCATCGAGACACTGAAAACATACTGTGATGATGCTAACCGGGGAGGGGGGCCGCTCTACCAGCGTCTGGAGAAAGGTTTCCGCGACCTGATCACCCGTGGTGAGCTAAAAGCCGGATACGCGATTCCCAGCGAACGCGAACTTTCGGAACGCTTGAATCTGTCCAGAGTGACAGTCCGGCGTGCGTTAAGTGAACTGGCTAACGCGCAGGTTATCGTGCAGCGTCGTGGAGCGAGAAGTACTGTGGCGGGAAGGGTTGAAAAGCCGCTGTCTTCGCTGACCAGCTTTAGTGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2972070-2969999 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHJC01000001.1 Yersinia pseudotuberculosis strain NCTC8580, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2972069 28 100.0 32 ............................ GATTGGCAACGGCTTGATCAGTGCCCGCTCTG 2972009 28 100.0 32 ............................ ATATTCATCTTCTTGCATTGAACGTTCCTCAC 2971949 28 100.0 32 ............................ GTTGGCAGTGTTGCAGATATCGAAAGGTACGA 2971889 28 100.0 32 ............................ TATCATTGGAAATCATTGGCGATTTTTCTGAC 2971829 28 100.0 32 ............................ ATGTGCTACCAAGCGAGTCTGACGAGTAGCAA 2971769 28 100.0 32 ............................ AATCACACCACAATTACTAGTTGGCGCAGTAT 2971709 28 100.0 32 ............................ AATCAGACAGGCCAGACTCAGCTAGCCCAGGC 2971649 28 100.0 32 ............................ TGATGATGCAGAGGGCTGGCAAAGCGCCAATT 2971589 28 100.0 32 ............................ TCACGGTGCAGCGGCCCACACCTTTCATATTG 2971529 28 100.0 32 ............................ AAGGACTTCACTGAGACCTATCTCGCCGTCAT 2971469 28 100.0 33 ............................ CGGTGACTTCGTGAGTAAATGAGCGTTATTGAC 2971408 28 100.0 32 ............................ AGACACGCAGCTAGTTCCACGTCAATAATTTG 2971348 28 100.0 32 ............................ AACTGGAAGCGGCACAGAAAGAGCGTGATGAA 2971288 28 100.0 32 ............................ TGATGATGCAGAAGACTGGCAAAGCGCCAATT 2971228 28 100.0 32 ............................ ACCTCATTACCGGCAGTCAATCTGCTGAGGAA 2971168 28 100.0 32 ............................ GTTTGAAAAAGGTGATGATGAGGTTGATTGGG 2971108 28 100.0 32 ............................ GTCAGAGTATGACTAACTCATTTACAGCTTGC 2971048 28 100.0 33 ............................ CTATCGGCAGTGCAAATCGTGTAATGCCGGATC 2970987 28 100.0 32 ............................ ATTCTGATGTAACAACTCCCCGCAGGTAATCC 2970927 28 100.0 32 ............................ AAGAATGCGGCGCTATAAATTGCCAAGCAGTA 2970867 28 100.0 32 ............................ CGCTACACAAGCCAGCCAGCTAAAGTAGCATT 2970807 28 100.0 32 ............................ ACTTTGCATTATCAAATAGAACGTTGTAGAGC 2970747 28 100.0 32 ............................ TATGCAATACGCCATTGCAGGGTATCCCGCAT 2970687 28 100.0 32 ............................ GCCCGTAAAAAAATGCGACGTACTGATGGAAA 2970627 28 100.0 33 ............................ AAGTTCTAACGAATCTTCGCCGATGTAATACAT 2970566 28 100.0 32 ............................ CTTTGGTAGAGGGGAATGCAGATGCTGAGTAA 2970506 28 100.0 32 ............................ ACTAAAAGCGCGTAAGTCAGATAAGAACCTGA 2970446 28 100.0 32 ............................ ACAAATCGCACAAACAAAAAAGCCGAGGATAA 2970386 28 100.0 32 ............................ GTACAGAACGCCGTCCTCGTAATAGACACGCT 2970326 28 100.0 32 ............................ ATTTATGATACGTGGATATCTGGATACACCGC 2970266 28 100.0 32 ............................ TTCCCAGCGCATATCAGCGGTCGCCTCGGTGC 2970206 28 100.0 32 ............................ ATCATGACAATCCAACAGTTGTGGATCATCAA 2970146 28 100.0 32 ............................ AACACAGTAAACATGATGCCCCAACTTCTGAT 2970086 28 100.0 32 ............................ TCACATTTACACCGGAGAATGGGCGCACTGAG 2970026 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCGATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGAAATTGTACTGTGGTTTTATTATGAGTGATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAATTATTTTACAAACAGGATGTTATCCGTATTATCTTACT # Right flank : CCGTGCCGGGCAAATCAGCTTGGTGACCCATGCATTGAAGTTCACACACAGTGATGCCAAAGGCAGCAGTGTGTTTAACCTGCCAGCGGCAGAAAATGATGCTATTTATCTCTCTAGTGCCACCTTAGGTCAACCGGCTGTAGATGCCGTCGGAAATGCCGCCGCACTGGATGTCGCAAAGCTGCTACAAACCGTACATAACGGCGATTCATTACTGGCTTGCCTTAACCGGGCAGATAACTCGCCATTAGCTGCGTTGGCAGAGAACCCGCAACAACTGGCATTATGGGTTGAAGGGTTCAAACAGGCGCTGGTGGATAAACAGCTCACGTCACATAAACTGGCCAAGCAATTTTATCTCCCGGTGGGGCCAGATCAATACCACTTGTTAAGCCCACTTTTCTCCTCATCACTGGCGCAGGCCATGCATCAACGTATTGCCGAAGCCCGTTTCAGTGACCAATCGAAAGAGGCCAAGGTTGCCCATAAAGCAGGGAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3637516-3635988 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHJC01000001.1 Yersinia pseudotuberculosis strain NCTC8580, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3637515 28 100.0 32 ............................ ATGGTAATGCCTATGTCCAGTAAGTCTTTTAA 3637455 28 100.0 32 ............................ ATCGAGCATGGTGAAATAGATCCTGATGATGC 3637395 28 100.0 32 ............................ TTTATGGGGGCCAGATGGCGACTGACCGATCC 3637335 28 100.0 32 ............................ TGTGCGCCCGATACCTCACCGAGCAAGACGAT 3637275 28 100.0 32 ............................ ACTCCCGGCGTAATGGGACTGACAAGGTTTGA 3637215 28 100.0 32 ............................ ATCACGGTTCTGGATGGCTGTGACGACATTTC 3637155 28 100.0 32 ............................ TAGTGGCAGTACGTAGACGTTCAAAAAATGCC 3637095 28 100.0 32 ............................ ATTTGCATGACGATCCAAAGGCCGGCGAACAC 3637035 28 100.0 32 ............................ AGTGAGCAGGTTACCGCGCAGAATAAAATCAC 3636975 28 100.0 32 ............................ CGTTACCGCATGTGGCCTGGCCCGCTTACGAT 3636915 28 100.0 32 ............................ TATGTGGTACCCGGACTATGAAGGCCTTTACT 3636855 28 100.0 32 ............................ GTGAAGCCACAATCAAAATTCTGAATGCTCAA 3636795 28 100.0 32 ............................ ATCAGATAAACGCCACCGCGCTGGGTGGCAGT 3636735 28 100.0 32 ............................ TCATCTAGTGGCAGGGGGAAGGTCACTGTGGT 3636675 28 100.0 32 ............................ TTTCCAGCTCAATACCCGTCATTGCAGGTATC 3636615 28 100.0 32 ............................ AGCCATGATGCGCATGGATTTGACGTCTTCAG 3636555 28 100.0 32 ............................ AGGCAAACAAATCAATAAACGTGCCGCTGGCT 3636495 28 100.0 32 ............................ AACCCACACCAACCGCACCGCCACCGCCCATT 3636435 28 100.0 32 ............................ GAAAAGCCTTGCTCAAAACGTACAATGCTGCG 3636375 28 100.0 32 ............................ TATGAGTAGCTTACACAAGCTTGATATCCTAT 3636315 28 100.0 32 ............................ TAATAAAAAATGGTTCTGGTATGTCAATGAAA 3636255 28 100.0 32 ............................ AGTGGAGGACTAATGCTAATCGGCTTTGTTCT 3636195 28 100.0 32 ............................ TTCACGTATAAAGTCTTTAACATTTAGTGGAG 3636135 28 100.0 32 ............................ GCCACCAAACATCAGATAAGTGTGCTTTGATA 3636075 28 100.0 32 ............................ TACAGCGTCCCCTTTTTGCAGATCTGCAAATC 3636015 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGTCGACGATGTGCTCACGCCGCTTTAACGTATTCATACGCCAACCTTCAACCTTTGGTTATCCGTAAAGTAATTACAACAAAGAACGCCAATCAGAATTGCCACCTGGCTCACAGTACAAAACTTGCTATAAAAACCCTAAAAATCTTTCGATTAGTCATCAATCGAAAGATTATGCTAAGAATATAAGAATGGATAATGGGGAGTGAAACCAGAAATGGCGGAGTATTCGATTCAGTAAAGGGAAAGAAAGTGAAAAAATATAGGCTAAGGGGAGTGGTTATCGCTTTAAAATCAGCCCGTGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGAATCATTTTTTAACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAATAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : GGGTCACTGTCTGTGCACCAGCGCGGCCCCGGCCTGCGCCTCCTGCAAGTAGGCCAACGCCACGACCAGAGACTGTACCAGGCAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCGGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCTGTTCACCTGCTCGCGCAACATCCCCCCGAGGCCATGAAGTTGCACTGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGCAGTTCCACCGCACGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGCTGTAGTGCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //