Array 1 468708-471632 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134478.1 Serratia plymuthica strain NCTC8015 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 468708 29 100.0 33 ............................. ACATTTTTATCACTAAATACCTTTGCCATAGTC 468770 29 100.0 32 ............................. ACTGTCCAATCAATGGCAGGCCAATGTGGTTT 468831 29 100.0 32 ............................. AGCATCCGGAGTTGCTAAAAGAAGACTCCAAT 468892 29 100.0 32 ............................. CGATGTGGTGCCCGCTTCATTTGCTTTGGTCA 468953 29 100.0 32 ............................. CATGATTTGGGATTTGTCCCCCTTGCATGGAT 469014 29 100.0 32 ............................. TCTAAGAACATGTACTATTCCCGCCATCTTGC 469075 29 100.0 32 ............................. GCTGTTCTTCCAAATCAGGCAAAACTGGCACC 469136 29 100.0 32 ............................. GCGCGGGAAGATGCTCGTATGCGAAATATTTG 469197 29 100.0 32 ............................. CCTCCGCACCTATCGCGAGCAAGATCCGGGAT 469258 29 100.0 32 ............................. AATCTTGCGTAACTCAGTGGCGTTCATATTGA 469319 29 100.0 32 ............................. GTCGTCGATCACCTCGGCAATATCGCGCTTGA 469380 29 100.0 32 ............................. GTGAAATACTGTAACAACAACATCTTGAACTC 469441 29 100.0 32 ............................. GCTATTTTTGAAGATAAGAAGCACTCCCAAGG 469502 29 100.0 32 ............................. AATATGACGCTCGTGTGAAAGAGAGCATCACC 469563 29 100.0 32 ............................. CGTTTCGCAGGAAGAAATCTGCGATAGCGACG 469624 29 100.0 32 ............................. AAACAGGAGAAGAACATGCTGACAGTAAAAAT 469685 29 100.0 32 ............................. AGTGTGGTTATCGATAATCCAACCATCGGCGA 469746 29 100.0 32 ............................. CTCTACAGCGAAATGCGTGGGCTCAACCTGAC 469807 29 100.0 32 ............................. GAGTCTGAACAATGCTCATCCTAACCATCTTG 469868 29 100.0 32 ............................. CAGCACGCCGATAACAACGGCTATTCGGTTCC 469929 29 100.0 32 ............................. AAGGTAATCAGCAATGCATGCAGATGTAACGG 469990 29 100.0 32 ............................. ATTGGACAATTGATTGGGCAAGAGAAAGCCGA 470051 29 100.0 32 ............................. ATTGCCGTCTATTATGTTTTTGTTTTTCGTGT 470112 29 100.0 32 ............................. TTGATCCACATGCCGCCGTCCATCGTCATCCT 470173 29 100.0 32 ............................. CCCAGCTTAGCACGCAGAGGGAGCCCAAATTG 470234 29 100.0 32 ............................. TGGATATTTATTACGTGGAGGCAGTGGCGAAA 470295 29 100.0 32 ............................. TTAGAGCATACCGGTGCAAACGGCGGACCGAT 470356 29 100.0 32 ............................. CCGAAGCTACCCGTCGCGGGTCAGATGATATG 470417 29 100.0 32 ............................. CACAATGAATCACACAGAATTTCCCTCTTCTC 470478 29 96.6 32 ..T.......................... TGTCCTATCAATGACCCTATGATGCGGCGCGA 470539 29 100.0 32 ............................. TTAGGCTGATATAATTTTGTTCGATAATCGGC 470600 29 100.0 60 ............................. CTCAGGCCGTAGGGCGGGTCGGTAACAATCGAGTGTTCCCGATCGCCGCTGCCAGATGGT 470689 29 100.0 32 ............................. GGATGTTCTGTGATGATGGGTGCCGGGACGAC 470750 29 100.0 32 ............................. CCAAAGGTGTACTGCCTGTGAGTCCTTGTACA 470811 29 100.0 32 ............................. ATCGATACGACGGCCGCATTGTCAGTATCGCC 470872 29 100.0 32 ............................. AACTGACCATCGATAACACCATGGCAGCAGCA 470933 29 100.0 32 ............................. ATATAATCCGCCTCTCGCAGATAATACCATCG 470994 29 100.0 32 ............................. GCGGCGGAGTTTGCTGCTGAGCACGCAGCCAT 471055 29 100.0 32 ............................. GACTTGTGACACTGAGTGTCGAGTCCCTCGCT 471116 29 100.0 32 ............................. TCAGCCATATCACACCGTCGCTTGCATGCAGG 471177 29 100.0 32 ............................. TATTTCTGTATCTCGATTTGAGTTGATTTCTT 471238 29 100.0 32 ............................. GGCAATAGAGGCATTAAACCACCTCATTAGCA 471299 29 100.0 32 ............................. TCTTACCCGCCTCTCTCATTTCTTCTGTGCCG 471360 29 100.0 32 ............................. CGGATTCTCTGGGGTAACAGTCACAATCGGGG 471421 29 100.0 32 ............................. AAGGTTAGGCGAACGGCCTGCACTGTTGGAGC 471482 29 100.0 32 ............................. CACATCGGCGGGATCCAAGTGTACTTGCCTCG 471543 29 100.0 32 ............................. CACAGAAGCAAGCCCAAAGCGCAGGGCTAAAA 471604 29 93.1 0 ...........A..............T.. | ========== ====== ====== ====== ============================= ============================================================ ================== 48 29 99.8 33 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : ACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTTATCACCACGCCGATATTCTACCTCTCCGGCACCATCTGGCCGCTGCAGGCGATGCCGGGCTGGGTGCGGACCATTTCCTATTGCATCCCCTCAACCTGGGCCACCAAGGCGATAGCCGGGGTTAACCAGATGGGGCTATCGCTTAACGAAGTGTGGGGCGATGTGGTGATGCTGCTGGTGCTGGGGATTATTTATACCCTGCTGGGCGTCGGCGTGGGCTTTCTGCGCAACAGCGTGGCGCTGCGCAGTCTGTTTCGCAAACGGAGTGCATAGCGCGAGGTGGTTGTAGTATCGTCGCAATAATAGAGTTTTTCGGTGAATTTGCATTTTTGCAAATACGTTGTTTTTTATTGCATGAATATCAAATGGTTAGATTTTTTCAAAATGACTTAATTGTTGGTGGAATTTTATAGTCTTAAAAAATACAATTAATTCAGTTAGATAGTTTTAGA # Right flank : GATACTCCGTAGTTCCCAACGGACAGATGTCAATAATGGGCGTGTTACTTACGAAGCCATGTATATCTGGAGGTGGGTATCTTTCATAAAGAGTGGAACTGACATCGACCTGCTGATTTGATGTAATTTAAAAGCTATTAGGTATGGTAAGTTAGTTGCATTGTTAATTATTTTATTTTCTATTTTTTCATGAATTTTCTGATTGAAGTTATATGGGGTTTTAATTGATTTTGTGATGTTTTTTCCGGTTTGGTATGAGGTTAATTGGTTTTTTGTGTTTTAGAATAACTTATAGTTACCATTAACCTGGGGCTAGTGTTAAAACATACAATATATCGTTATTTTATCTAACAGAGATTTTTTATGGGAAGCGATATTCCTGTTAATTATATGCGTTATTGGGGAAAGGCGAAAAAAACAGACCTTCCAGAGGGCGATGATTATCACTTATTAGCCTACCATTGCCTGGATGTAGCTGCATGCGGGTATCAACTGGTTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 481204-483369 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134478.1 Serratia plymuthica strain NCTC8015 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 481204 29 100.0 32 ............................. AAAATTGCACTCCTTGAGTCAATCGACTTCAA 481265 29 100.0 32 ............................. GCATCCCATGCTAATACGTCTACCTCAACCCT 481326 29 100.0 32 ............................. CATTCCATAATTACGCTAGCCGCAACAGGCAG 481387 29 100.0 32 ............................. TTCAGCCGTATGAAGCTGGCTAACGATGGCAC 481448 29 100.0 32 ............................. CCAGCCAAGATAAGGAGCAGGCCGAGTACACC 481509 29 100.0 33 ............................. CAGATCATCGTGTTGCCGCTGATGAGCAATACG 481571 29 100.0 32 ............................. CTTGCGGAATTCTGGGAAAATGGAAAGCTACT 481632 29 100.0 32 ............................. ACCATTCGCGACGATCTCCCCGCCCTGAAGCG 481693 29 100.0 32 ............................. AGACCTCGCCGATTTAACTGAAGAGCTCACTG 481754 29 100.0 32 ............................. TAATTGCCGCCGGGACATGGGTTGGTAATCAC 481815 29 100.0 32 ............................. CGCAACGCATGGTTTCGTCTTTGTAGTAGATA 481876 29 100.0 32 ............................. GGACGGTGATCACCATTCTGAATTACTCTGAA 481937 29 100.0 32 ............................. GCAGCAGGACTGCCCACCACGGCGTTTTTACA 481998 29 100.0 32 ............................. TTACGGCAACAATTTCCGAATAGCGCGCAGTA 482059 29 100.0 32 ............................. ACTAATCCCTTGCTTAACAATATTGTGAGTGG 482120 29 100.0 32 ............................. CTGGTGCTGATCAAGATAGCCGACAACGCTAA 482181 29 100.0 32 ............................. GCCAATTCTGGTGCGCTGGTGGGGGAATCTTA 482242 29 100.0 32 ............................. TGTGTTTTTTCTTTCTTTATTCCTGGTAGAGA 482303 29 100.0 32 ............................. GGTTAGATCAGGATACTGGCGACTGGATGCTA 482364 29 100.0 32 ............................. GCTTGGTTTTGGGTTCTGGTTGGCTGCGCCCT 482425 29 100.0 32 ............................. GCCATAACGTTTCTGCTGATTTCCATTCCAAC 482486 29 100.0 32 ............................. TGGGAATTTCGCCCAGGCACGCCGCATCAGGA 482547 29 100.0 32 ............................. TTCTACGACAGCGAGTTTGTGAGTTTCTTTAA 482608 29 100.0 32 ............................. CGGAGAGGTTAGAATTCTCGGGCCAAACGGCC 482669 29 100.0 32 ............................. ATGTTCATCCGACGGTACTATAGGCACCAATT 482730 29 100.0 32 ............................. CCCTTGCTGAAATAGGTTTCGCATTTGGTGAC 482791 29 100.0 32 ............................. GCGTCGATATTTCTGGGCGAGGAACTGGCGTC 482852 29 100.0 32 ............................. AGACAACTGGAGGCCGCCTAATGTTCACCAAT 482913 29 100.0 32 ............................. CGTGGCGCTCATTTATTGATGCGTGAGAAGTC 482974 29 100.0 32 ............................. TAATCCAGTAATGATTGTTCCACAGATCTTAA 483035 29 100.0 32 ............................. TTCATTCAGTTGCTCCCGATCGGTCACAAGGG 483096 29 96.6 32 ..........T.................. AGTTTGTTGGCGTGGTCAGGCGTTATGGTGCA 483157 29 100.0 32 ............................. AACTACGACCGCGCCAACTACCTGCCTCAGAA 483218 29 96.6 32 ............T................ AATGGCGGCCCTGTGTCTGCTGGAAGTATGTA 483279 29 89.7 33 ...........A.T............A.. TGGGAAACAGGGAAAATGGTTCCTGTTGGGTCA 483341 29 93.1 0 .G..........................C | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATCGAGGAAGTTTTAGCCGCGGGGGAAATCGCGGTGCCTAAGCCTTTCGATGATGCACAGCCGCCAGCAATTCCGGAGCCTGTTGGGCTCGGCGACGTTGGCCACAGGAGTCGTAACTAATGGGAATGCTGGTGGTGGTGACGGAACAGGTTCCCCCAAGGCTACGCGGTAGGCTTGCGGTCTGGTTGCTGGAGATTCGCGCTGGGGTTTACGTCGGTGATAGCTCACGCAAAGTCCGAGAGATGATTTGGCAACAAATCACGGTGTTGGCAGACGAAGGGAATGTTGTTATGGCCTGGGCGACGAATAATGAGTCCGGGTTTGATTTCCAAACTTGGGGAGAAAACCGGCGTGAGCCGGTGGATCTTGATGGACTAAGGTTGGTCTCTTTCTTACCCTTGGAAAATCAGTAGGTTATAGATCTTTAAAAACACGGAAAATTTGGTGGAATTTTAGGGGTATAAAAACTTCTATTATAACAACAGGTTAGTTTTAGA # Right flank : CTAGGCTCTCGCATTCCCCTCAACCTGGGCCACCAAGGCGATCGCCGGGGTTAACCAGATGGGCTTATCGCTTAACGAAGTGTGGGGCGATGTGGTGATGCTGCTGGTGCTGGGGATTATTTATACCCTGCTGGGCGTCGGCGTGGGCTTTCTGCGCAACAGCGTGGCGCTGCGCAGTCTGTTTCGCAAACGGAGTGCATAGCTGACGCCGCCGTATCTAGTGCTGTGCGGCGGCGACCGACATAACGCCTACCAGTCCGGCAATTTGTGCCACCTGTTGCGGCCGCAATGCATTTTCGCCAAGTCGACGCAACAGGGCCTCCCGCGCCACGGAGAAGGCTAACGCCTGGCCGAGGATGGCGTGAGCGCACAGAATATTTTCCTGCAGGGCCGGGTCTTCACCGCGGATCGCCGCGACTAACTCGCTAACGGCCTGATGCAGCGGTAAGAACAAGCGAGAATACAAGGCATCGAACTCAGCGCTGGGCTGGAGTTGTTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //