Array 1 230452-230720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDL01000001.1 Yersinia kristensenii strain FCF324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 230452 28 100.0 33 ............................ AAATTATAATTATTTTTTAAAGTTCTATTAGAT 230513 28 100.0 32 ............................ CAATATAGGGAACATTGTTTGTTATATGCAGG 230573 28 100.0 32 ............................ AATATTCCGGCCCTCAGTCCGTTAGCGAGGCA 230633 28 100.0 32 ............................ ATTCTGGATGTTGACCCGAAAGGCGGCGCGGT 230693 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGGATAACGGTGATGTGTTCACTGCCGCACAGGCAGCTTAGAAAATCTTCCCCCGTAACGTACACCGCCCCGCCCGGTTCACTGCCGCACAGGCAGCTTAGAAAGTCTGGGTCTGTCTTCTGCGGATTGTGCGCAGGTTCACTGCCGCACAGGCAGCTTAGAAAGCGATAGCGTGGCAATTGCGCGAAAACGAATTGTTCACTGCCGCACAGGCAGCTTAGAAATTTGTTCAAGCTGCAATTGCAGCACTGATCGCGTTCACTGCCGCACAGGCAGCTTAGAAATACGTCGACCGCGTCATATTTACTTTCGTTATGTTCACTGCCGCACAGGCAGCTTAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGCACAGGCAGCTTAGAAATCGTCGTAACGAATCTGTGATGCCTTGGCTATGTTCACTGCCGCACAGGCAGCTTAGAAATTTCATGGCATCTTCCATGCCGGTGTAACTCTGTTCACTGCCGCACAGGCAGCTTAGAAATCGGTGCGGCCGTAGTGACGCCAGCATAAAACGTTCACTGCCGCACAGGCAGCTTAGAAACAATTGCGCCGGGATCAATGTAGCAAAGTCTAGTTCACTGCCGCACAGGCAGCTTAGAAAAGCATCAACATAAATCGCGAGGGTGTCATTTCGTTCACTGCCGCACAGGCAGCTTAGAAAAGACAGCGTTTAACGATTGAGTTCAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 230866-231734 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDL01000001.1 Yersinia kristensenii strain FCF324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 230866 28 100.0 32 ............................ TCGTCGTAACGAATCTGTGATGCCTTGGCTAT 230926 28 100.0 32 ............................ TTTCATGGCATCTTCCATGCCGGTGTAACTCT 230986 28 100.0 32 ............................ TCGGTGCGGCCGTAGTGACGCCAGCATAAAAC 231046 28 100.0 32 ............................ CAATTGCGCCGGGATCAATGTAGCAAAGTCTA 231106 28 100.0 32 ............................ AGCATCAACATAAATCGCGAGGGTGTCATTTC 231166 28 100.0 32 ............................ AGACAGCGTTTAACGATTGAGTTCATCGAACA 231226 28 100.0 32 ............................ GCTAACGTAGTGAATCGCGTCCATGTCTTACC 231286 28 100.0 32 ............................ CAAATGCGCAGCCATTAACCCATCAGCATAGG 231346 28 96.4 32 C........................... GGTAGCTTGGTGACTAATGAAAGCAAATGAAT 231406 28 100.0 32 ............................ CATCAACCCCGCGCCGTTAGCAAATTTGGGTA 231466 28 100.0 32 ............................ CATCAAAAATGCAGATGGCTCAATTAACTTTC 231526 28 100.0 32 ............................ ATAGTTGCATTGCCTGATGCACGACTAATTCA 231586 28 100.0 32 ............................ AACTGGGCGAGGCGGTGCGCCCTCTTTTCCCG 231646 28 100.0 32 ............................ GACTTGATACATTGAACCTGCTGATACCGGGC 231706 28 85.7 0 .....................AC.TC.. | G [231728] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTCACTGCCGCACAGGCAGCTTAGAAAAAATTATAATTATTTTTTAAAGTTCTATTAGATGTTCACTGCCGCACAGGCAGCTTAGAAACAATATAGGGAACATTGTTTGTTATATGCAGGGTTCACTGCCGCACAGGCAGCTTAGAAAAATATTCCGGCCCTCAGTCCGTTAGCGAGGCAGTTCACTGCCGCACAGGCAGCTTAGAAAATTCTGGATGTTGACCCGAAAGGCGGCGCGGTGTTCACTGCCGCACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTACCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTAGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATTCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 240627-241675 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDL01000001.1 Yersinia kristensenii strain FCF324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 240627 28 100.0 32 ............................ TCCCACTCACCCTCGCCGAGCGCAAAAAGTAA 240687 28 100.0 32 ............................ AAGAGAATTAGCGGCCCAGTTTGTTGACTGTA 240747 28 100.0 32 ............................ AGATAGAAACCCAGCGCCAAGCAGTAGCAGCT 240807 28 96.4 32 A........................... ACCTGAATAGCTTCCGGGTGACTGCCAATGGG 240867 28 100.0 32 ............................ ATCAGCTAATACGCCAGTTACAACAATATTTT 240927 28 100.0 32 ............................ GCATTAAATCCAATTTGAGACTTAACAACACC 240987 28 100.0 32 ............................ ACTGCTTTATACTGTTCCGGACCGGTATACGT 241047 28 100.0 32 ............................ TGTACCGGTTTCAGCAACAAAATCACTATTTT 241107 28 100.0 32 ............................ ATAAAGGTCTCCTTGTGAATCAATATCAATTA 241167 28 100.0 32 ............................ GAAACGCGGTGCAGCACGGAACGCAATAAGCT 241227 28 100.0 32 ............................ ACGCGGCCATCGTCATGAATGATGACCGTAAT 241287 28 100.0 32 ............................ AACTCAAGGCCGTAAAGACTTGGACGAAAGCA 241347 28 100.0 32 ............................ AGAAGCATTGATATCTTCGGAATGAAGCTTTC 241407 28 100.0 32 ............................ GCCAGCATTTGGGCGTTAGTGCCGGAGCACTT 241467 28 100.0 32 ............................ TTTCATTCGCCCGGCGCTGGACTATAACAAAG 241527 28 100.0 33 ............................ CTGATCGCGATAGAGTCTCTCAGATAAAGAGCG 241588 28 100.0 32 ............................ AGTCATTGTCCCGCCAGATAATGACAATTTGC 241648 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGCCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCCGTGCCAGCAGCGGTTAAATACCGTGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGTTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATTGAGTTGGCCGAGAATATTAAAAAATCCTTTTTTATGATTTTGGTGGGTTATTTGATAATAATCAGTAAGTTATTAATATTTCGTTACT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTTTAGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATAATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCATTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGCCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //