Array 1 397645-396424 **** Predicted by CRISPRDetect 2.4 *** >NC_009952.1 Dinoroseobacter shibae DFL 12 = DSM 16493, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 397644 36 97.2 30 .....................T.............. CAGGCGTATCCGCTCTCGTCGGCGTTGTCG 397578 36 100.0 30 .................................... CTCGGCAAACCCGCCGAAATTCACCGCCAC 397512 36 100.0 29 .................................... CGCTCTTTCCCGTTACCGTCTTTCTTTGT 397447 36 100.0 30 .................................... CTATTCAGCCGCGAAAGGCAACGCGGCGGT 397381 36 100.0 30 .................................... GCGCTCACACGCGCAGGCGAGGGCGGCTTT 397315 36 97.2 30 T................................... GGCGCCGTTCAGCAGGAGGGCGCGAACTCC 397249 36 100.0 30 .................................... TACTCCTTTGTGGGCGCGGATGCCCGATGT 397183 36 100.0 30 .................................... GCAGGCATGGCGTGAGCGCGCGACGTGCAG 397117 36 100.0 30 .................................... ACTTACGTCAGTCAGGGCGATGTTCGTCAG 397051 36 100.0 30 .................................... CGGTACGAGGATACACGCGCCAACGTTCAA 396985 36 100.0 29 .................................... TTTCGATATGTGTGGAGCCTTCGCCAACG 396920 36 100.0 30 .................................... CGGTTGCGCGTAGCACCGGGTTGCGATTTC 396854 36 100.0 30 .................................... CATGTCAGAGTGCAGGCGCGGATGGGTTCA 396788 36 100.0 29 .................................... CTTTCAGATCAGCTACGAGCTTTTGTGCG 396723 36 100.0 30 .................................... TACAACAAGCTGCGGGAGATGGCCAAACAC 396657 36 100.0 30 .................................... AACGGTATCAACGCGCCGAGTGGTAAATGT 396591 36 100.0 30 .................................... GTGGCTGACGGGCGGGACGCCCACACGCTT 396525 36 100.0 30 .................................... CTTGCCCCCCGAATGTCGTGTCTGGACGCG 396459 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGCGGCTGGACCCCGAATTCTGAACAGCTAAACT # Left flank : GTCCGATACCTCGAGGCCGCCGAACCGCGCCTTGTATTTGTAAAACGTTGCCGTGCTGACCCCGTGCTTGCGGCAGACATCGGCCGTCGTCATTCCGGCCTCCTGCTCCTTCAGCATCCCGATGATCTGCTCTTCCGTGAACCTTGATCGCTTCATTGTCCGTCTCCTGGTTGGGCGGACTCTACCTCAAACTGGAGGAAGAAGCGGCTCTCAGGTCACTCACTCGAAGGAATGCAGTGTCTTCATCGAGGAGCGCTGAGCCCAACTGCTCATGTGGAAGCACGAAGGACTTCGGCCCCTCTTGCTTCCACAGTGCTTCCACGGCGGCTGGAAACGCAAACGCCGCCCCGGAGGGCGGCGCATAAGCGTTTGGAAACGAGTAAAAATTTGGTTGCGGGAGGGCGCAACCACCGTTGTCGAACTCGGCTAGTTTGTCGTATTTCCGGAAGAAATAGCTGAACAGCTAAACTGGGTTGGCGCTGTTCCCGTGTCAAATGTGG # Right flank : TGTTCCTTTTCCAAGCCCCTGAAACAACAGTGGTTTTGGAAGAGGACAAGTGAGGCAATCTGGAAAAAATTCATCAAAAAAGCGCAAGCTGCTCTGGATTCTTCCGAGCCGCCCTTCGGCCCTGATCCGAGAAGTGGACGATATCACGGTATTGGCGGTCCGTGAAGTTCAGGACCTGGATGTCGCCTTTCTCGGGCAGGTTTCGTTCGATCCGGCGCACGCGGGTCTGGAACGCCTCCTTGCCGTTCACGAAGCGGGCGTAGACCGAGAACTGGCTCCGCTCGAACCCTTCATCCAGAAGGAAATTCCGGAATGCGGTGGCGGCCTTGCGCTGGGACTTGGTGTCGGTGGGCAGGTCGAACATCACGAGTATCCACATGATCCGGTATCCAGAGAGAAAGGCGGGGGCGTCGGTCATGCGCCGAGGCCTGCAAGGGTCAGCGCATCGGGCGGTGCAGGCAGGGCGAGATCCAGCGTTCCGGACTCGAAGCTCTGACCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCCCGAATTCTGAACAGCTAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 3390219-3392259 **** Predicted by CRISPRDetect 2.4 *** >NC_009952.1 Dinoroseobacter shibae DFL 12 = DSM 16493, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3390219 29 100.0 32 ............................. GGCATCGCCCCGGCGGCCACCGACACCACCAG 3390280 29 100.0 32 ............................. TGGTCGGGCTGGACGTATCTCGCGGAGACGCT 3390341 29 100.0 32 ............................. TTTCCAGACAACGGGCCTGGCCCTGAATGCCG 3390402 29 100.0 32 ............................. GACACCGGGGCGATCCGGTCGCCGGGGTTCAT 3390463 29 100.0 32 ............................. CTGGAGGGAGCTGTGGTTGGACCTGACCCGCT 3390524 29 100.0 32 ............................. CTGCTGACGCGCCTGGCCGGGGCGCTGGATGC 3390585 29 100.0 32 ............................. GGGAAGGTGCTTGGACTTGCGCCGCCGAGGTT 3390646 29 100.0 32 ............................. TTGGACAGCACCTCGGGATCGTTGGGCAGCGT 3390707 29 100.0 32 ............................. TCTTGGACAGCACGAGGGGGGAGGTGATTCTG 3390768 29 100.0 32 ............................. CCGTCCTGGTCCTCGAACACCCCCGCGCCGGG 3390829 29 100.0 32 ............................. TGTCCTATGCCGTCGAAAAAGCCGCCAAAGCC 3390890 29 100.0 32 ............................. ACTCACCTATGACGAAGACCGGACGCTCAGCG 3390951 29 100.0 32 ............................. CCGGAGGGAGCTGTGGTTGGACCTGACCCGCT 3391012 29 100.0 32 ............................. CGACCACACGTCGCGAAGTCAAGATCCCGACC 3391073 29 100.0 32 ............................. GAGACTGATAGCGTCGCGGTTGAGACGTTCAA 3391134 29 100.0 31 ............................. TTGAACCCCTCGGCCCACCCGACGGGCAAGG 3391194 29 100.0 32 ............................. CCACCCGAAACCAGCGGCCTGGATGAATTCAC 3391255 29 100.0 32 ............................. GTAGTAAATCATGTTCGGGCGCAGCTTCATAT 3391316 29 100.0 32 ............................. AGTGGGATCGCTTGATCCGCGACCGTTTCACC 3391377 29 100.0 32 ............................. ATCCGCATCATCGCCACGGAGTCCGGCGCCGC 3391438 29 100.0 32 ............................. CGCCGAGCGTTTTGGCGTGACGGTTAGTGATC 3391499 29 100.0 32 ............................. TTTGGTGACGACCTATTCTTGAAGATCAACGC 3391560 29 100.0 32 ............................. GGCGCGCTCCTGCTGGCTGTGGTGGCGTTCCT 3391621 29 100.0 32 ............................. GGCGGCAAGGGTGACACTATCGAGGATCTGGT 3391682 29 100.0 32 ............................. GCGATTACGAAAAGCACCTGACCTATATCGAG 3391743 29 100.0 32 ............................. GCAATGGCCGATATGCTCGATCCCCAAAAGGT 3391804 29 93.1 32 .T..........................G TGGAACACGTGCACGTCGATAATCCTGGGCCG 3391865 29 100.0 32 ............................. AGCGAGGGCACTGCGACCGCCACCAGCGCCGA 3391926 29 100.0 32 ............................. TCGGCTCGCGTCGTCAACTGAAACCGCATCAC 3391987 29 100.0 32 ............................. GTAGCGATTGGGGTGTCGCCTCCTTCGAGGTA 3392048 29 100.0 32 ............................. TACGACCGCCAGCGGTATATTATTGGTGTGGA 3392109 29 100.0 32 ............................. AAGGCCCCGCTCGGGCCGGACTACGTGCGTCA 3392170 29 100.0 32 ............................. GGCGCGAGCGCTTCCTGCACATCGCTGGGTGG 3392231 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.6 32 GGCTCCCCCGCCCCCGCGGGGATAGACCC # Left flank : CATGCCCGTCGAGCGTATCGCGCGCCGCCTGACCGGCGAGACGCTGGCGAAGGAGCAGGTCATCCCCGCGATGATCGACCGGATCAAGACCCTGATCGAAGAGGGCCCATGAGCCGCGAGCCACGGCCGGAGACAGCCGCGCCATGCCCATGACGATGGTCGTCACCCGCGATGTCGAGGCCCGCTACCGTGGATTTCTCACCTCCGTCATGCTTGAGGTCGCACCGGGGGTCTACGTCGCCCCGGATCTGTCCGCGGGCGTGCGGCAACGGGTCTGGGCGGTCCTGTCGGACTGGTACGAAACCCTGGGCCGCGGTGCGATCGTCATGGTCTGGCGGGACCCGGCCGCCACAGGCAGTCTCGGGATGGAGATGCTGGGCACACCTCCGAAGGAAATCGTGGACGCGGACGGAATTTTGCTCGTAAAACGAAAGTGAAGCGCGACCCGCTCAACCCGGCCCTTTGACATCGCGAGCAATTTCAAGGAAATGGCTCCAAGA # Right flank : CCCGCAGGCTTCGGTCGCGGCTGGATGAAAGTTCAGTGGCAGGTCACGTGCTTTCCAGGATAGCCACGACTTCAAGCTTTCGCCCTAGATATTTCAGTAGCTTACCACAGAAACCGTCACAACTTTTGCGACTCTGTCCACATCTTTCCTCCCCGTAGAAGCACATCTTTTCCTCTAGAAGCGCACCGCATCCTGGCGGTCCGCATTGAGGTGAAGAGGAAAGCAAATGGCAAAGCTCACGCAGGCGCAACTGGCGGCGCGGTGGTATGTGTCGCCGCGGACACTGGAGCAGTGGCGGTGGTTGGGGAAGGGACCACGGTTTCTCAAGATCGGGGCGCGGGTACTCTATGACGAGGCCGAGATCGAGGCCTATGAGGCCGGGCAGGTTTGCCAGAACACCCACGGCCCGCTCGATCCGGGGCGCGGCTGATGGCGAAGCGGTTCCCCGCCAATCGGATCAAGACCCACCGCATCTACACGGTCTGGGAGGTTTCCGACGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCCCCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //