Array 1 94285-94619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERWM010000010.1 Aeromicrobium sp. YIM 150415 Scaffold3_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94285 29 96.6 33 ............................G ACCAGCGCATTGGTGGCGGTGGTCCCCGACGTA 94347 29 100.0 32 ............................. TCGGCCACGTTCATCGGGGTGTCGAGCATGTG 94408 29 100.0 32 ............................. CTCAAGCGTCGCGGACCGCCCCGACATCGAGA 94469 29 100.0 32 ............................. TGCTACCCGGTGCGGCCGATCCGATCACATCA 94530 29 100.0 32 ............................. GTCACGACCTCACCGGTGGAGTGCTTCTCACA 94591 29 82.8 0 .........AC..G..T...........T | ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 32 GTGCTCCCCGTACACGCGGGGATGATCCC # Left flank : CTCGTCTGGCACGTCACGCGCCACGCCGAGGAGCCGGTTCCCGGCCGACCGGTCGTTGCCGAGGTCGCGTCCCAGGAGGTCGCCGGTGCTGGCGGCGCCTTGGCGCCTGGCGAGTCGGCTGTCGTGGATGACCCGGGCGGCGTGCATGGTCAGGGCATCGAGGCGGTTCTTCACCCGCCCCACCGCACCGGTGACCTGCTGTGCCTCGGCGGGTGTCAGACCCGACCGGACGAGGGGGCCAAGACGGTCGATGACGTCCTGTAACGCCGCAAGCTCCGCTCCCACTGTCGTGGCGGGCTCGACGTGTTGCGCGACCATCTGATTCACCCCCGGATCAAGAAACCATGGATACCGAACATGTGTTCGATATGTTTCCCACTCTAGGCGCCCCCGCTGACACTTTCCGGGTTCATCCACACCCACCCACAACGGGACGTGGGCGTGGTAGAAAAGTGATGCTGAAACCACCAGGCCGCCGATGTTTGCGCAGGTCAGCAAGT # Right flank : TTGGGTCTCAATGCCGAAGGCCAGCATCTGCTGCTGCGCAGTCAGGAACGTCTGGCGCGAGAAGGGCGAGTTTCGGGCGAACGCGTCGAACTGCTCCATCTGGGCGTTGACTGCCTGAGTCGAGCCCAGCATGGTCGTCAGACCGGCACGAACCCGCTGCTGGAGGGTGTTGTACTGGATGCCGGTCTTGAGCGCTGCAGCGCCGACGGCGGTGATAGCACCGCCAACGGCCAGCATCGGCTTGCCGACCTGCGACCACTCCCGGCGCATCTGCTGAGCGGAACGTGAGCCCTTCTTGCCAGCCTCGTCCGTCGCCTTACCAGCGCCCTCGGCGCTGCCCTTGACCTTCTCCGCGGCGGAGGCCGCCTCGTCCATCGCGGCCTTGTACTGGCCGATCTCGGCTCGGAGGACCGCGGTGATGGATCGCTGTTGACTCGCCACGAGACACCTCCGAGTTCAGGGGATTCAAGGACAGATGCCGTAATGGCCCGATAGGGTCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGTACACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 95795-96124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERWM010000010.1 Aeromicrobium sp. YIM 150415 Scaffold3_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95795 29 69.0 30 ................G..ATGATC..GA CCAGGCGCCCTCGACCATCCACGCGTTGCC GT [95804] 95856 25 75.9 32 ...........G..----.......T..G GAGCGGATCGAGGTCGCGAAGAAACGGACCCC 95913 29 100.0 32 ............................. AAGGACGGCGAGAAGATCGGCCAGGTGCTGGC 95974 29 86.2 32 .............A......A....T..G TGCCTCGCGACCTTGTACTCGGATGCGCGGCC 96035 29 89.7 32 .............A...........T..G GCGACCAAGGTCGCCGCCGTCACCGGCGCGTA 96096 29 75.9 0 .........GT...A.C........G.GG | ========== ====== ====== ====== ============================= ================================ ================== 6 29 82.8 32 GTGCTCCCCACACGCGTGGGGATGACCCC # Left flank : ACGAATACGGCTCCGTGAGGGACCGAATCCCCGTAGTCATCAAGGACGAAAACGGCGCCATAGTCGGCCAGGAGACCCTCACCGAAGGTGACCCGCCGGATGAGCGGACCTGCATGTGGACCGCGAGCTTTGACCGCGCGGATTCCGACTCGGAGTACTTCACTGCCGAGCTCGGAGGGTGGACCTCTGCTCCAGTCCGTCGCAGTGGTGACACTGTCAGCTTCACCATGACGAACGACGGATCGAATCCTGACCCGGGCTGGGACCGCTAAAGCCGTTTCACGTCGAGGTACCAGTGGGTGCCCTTGCGGTCGTGCTCGTTACCCGCGTTCGAGGCGATCTCGCACGCGAAGCAGTGGTACGACTCGTTCGAATAGCGAGGACGCTTCCTCGCGTCTTTCTCGGTCGACTCGTGGATCGGTTGCCCGCATCCCTTGCAGAGCGTTGACTCGTAGATCGTGACCGCCTGAGCCAGTAGACGGTTCCGGTCTGTCGTCCAC # Right flank : GCGGCGGTGGGATGGACACACCTTGGACCGCTTTAGGCGCGCAGCCTACCGCCGAGCCTTGGGGACGTGATCCGCGCGGACCGCCATCGCAACCAGCGGACCACGGAGGATCTGCTTTCCTGGCTGCCCTGGCAACCGCGAAAGCACATCCTTCGTCCTTCACGGGCCGAGCGGCCTCCGATGGCGATGGTGTCGAATAGGCACGCAGGCCGCCTTCACACCGGTCAGGCCCCTTGGTTGATCTGATCTAGGCTGGAGACATGGCGACGGTGGTGCACGACTTCGATTGGCCGGACCGGCTCGTGGTGGGAACGGTCGGGCCTCCCGGGCATCGCACGTTCTACCTGCAGGCTCGCGACGGTGAACGTCTGATGAGCGTCGGCCTGGAGAAGGAGCAGTCGGCCGTACTCGCCGATCGCCTCGACGAACTGCTCGACGAGCTCATGTCGATGGACGGCAATCCCGCCAGCATCCCGGCTACCGCTCCGGACGGCCTCGAC # Questionable array : NO Score: 3.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.14, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACACGCGTGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGTGGGGATGAACCG with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72060-71848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERWM010000005.1 Aeromicrobium sp. YIM 150415 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72059 29 100.0 32 ............................. CGCGTCGTGGTGGTGCCGCAGGACGACACCCA 71998 29 100.0 32 ............................. CTGCTGACGCAGTTGAACGCCATGAAGCCGGC 71937 29 93.1 32 ..................T.........G GACTACGTGGCGGCCGGCTTCTGGCTGCTGTG 71876 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGCTCCCCGCACGAGCGGGGATGATCCC # Left flank : TGCCAGCGTATGGGAGGTTGTCGAAGTCGCCGCGAGCCATGGCTGAGCGGATCTGCTGGTCGATCCACAACGGTTGCGCTTCGAGACGGCGTTCGCGGCCCGCTTCGTACTCGCTCTGCTCAGTTTCGGAAGCCGGCGGGTCCTCGTCACCGATGCGGTAGCGCATGGCGCGTTGACGGCTGTCATCACGCGTCATTGAACCACCTCGCCTCCAGGTTACGTCCGCGGTCATGATCAGGGTCGCCATCGGTGGTTGCGTTTCCATTGTCGGGTGCCGGGTCGTCGGAATTCGGGGACGCCGTTGACGGGGTTGATACGGCATTCGAGGTGTCCGGCGTGGATCTGCCGGTGGTGGGGGTACCTCCCTGCACGGAGCGCAGCGGAGTGCTCGGGGGAGTCGGCGTAGACGGGGATGGCGTCTTTCACAAACGAGACGTGGGCGTGGTAGAGAAGTGATGCCGAAACCGCTCATCGACGTGTGTTTGCGCAGGTCAGCAAGC # Right flank : GAGAACCAAACGAACGCGATCTGGGATGCCGCCATGCTCCCGCTCTGCCGGGGATCGGTGAGGCCGCCGGTGAGCTGTTTCCTGCGCCGCGTGGGACGGAGGATGTGACTTCGTGGTGGTCAGGGCAACCGTGGAAGCACATCCTTCGTCCCACGCGCGACGGTTTCCCCACGCATCGCCTCGCGAGTCTCCTGCCCGGGCCGTGAGTGATCGCCGCGGATGGGCGGTGAGCCATCCCGCACTCCGACGACGAAAGTGCGTGACAGCTCACCGCCCACGGGCGAGATGCGGGATAACTCACCGCTGGCGCGGGGGAGCGGAGGGTGGAACCTCGCGCGCCCTACGATGTCGTGGTGACTGCAACCGTCCTCGCGGTGCTGGAGTTCTCGGGCATCTTCGTCTTCGCGATGACCGGCGCTCTCGTCGGGGTCCGTCGGGATTTCGACATCGTCGGTCTCGTCGTCCTGGCCATGATGACCGGTCTCGGCGGAGGGGTCCTC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38089-38727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERWM010000024.1 Aeromicrobium sp. YIM 150415 Scaffold9_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38089 29 100.0 32 ............................. TACCAATCGTTCGTGGCGAGGGCGTTCTCGTC 38150 29 100.0 32 ............................. ACCGATGGCCCGCGTTCCCGAGCAGCCCGACA 38211 29 100.0 32 ............................. CGCCAACGCCGAACCATCATGGCCGATCTCGC 38272 29 93.1 32 .....................G......G GCCCCCGACGTGTCGAAGTTCCTCGATGCCAT 38333 29 93.1 32 .....................G......G GCGACCAAGGTCGTCCACCACCCCAACTTCCC 38394 29 96.6 32 ............................G ACGAACCCGGCTTGCTTCTCCAACGTGGCGGC 38455 29 93.1 32 ............C...............G ACGAACCCGGCTTGCTTCTCCAACGTGGCGGC 38516 29 96.6 32 ............................G CCAGCGACCCGACATTGAGACGGTCGAGGCAT 38577 29 93.1 32 ..........T...G.............. GAGCGATTCGCCTTCCCCAGCGGCACCGCCTG 38638 29 93.1 32 .....................G...A... GACGTCGGGGCTTTCATCGACAAGGCGGCCAG 38699 29 72.4 0 .......T....C.GT........GGT.G | ========== ====== ====== ====== ============================= ================================ ================== 11 29 93.7 32 GTGCTCCCCGCGTAAGCGGGGATGATCCC # Left flank : GTGGGAGGTGTTCTGGCCGGGACCGCGGGGGCGCTGTACGGCGCCTGGCCCGTCGTGGCGTCCAATGTGATCTGGGCCAGCGTCGGTGTGCATACGCTCCTGGCGACGATTCGTGCTCGTCGCCGCCAGCCCATCGCTCTCTAGGGTCGCCATCGGTCGAGTCGGTTCTTCACCCGATCGATCTCACCCGTCAACTGCTGTGCTTCGGTGGGGGTGAGTCCGGTCCGGACGAGGGGATCGAGCCGCTCAATCACCGCCTGCAATGCATTCAGCTCGGCTGCTAGCGGTGTGGCTGGTTCGTTGACTGCTGCGCCCATCCCCGTTCACCCCCCACCGAGAACTTATCTTGTGTCGAACTGGCGTTCGATCTGGTTCCTGACTTTAGAGGAACCCGCCGACGCTTTCGGCCTCCGTCCACACCCACCGAGACAGGGTCTGCGCGTGGTAGAAAAGTGATGCTGAAACCGGCCAATGCCGCGTGTTTGCGCAGGTCAGCAAGT # Right flank : GGCGGTGGGCTATCCCGCACCCGCGTCAGCAAGGTGCGGGATGGCTCACCGCTCAGGTCGTCGCGTCGAGCCAGATGCCTGGTCGGTGAGTGATCACGCAGGTCAGTGCGCAAAGTGCGGGATCACTCACCGCTGGGATCCTGCGTCCTCGCCCCGTTTGAGAGCGCCGGATCCGGGAGCGAGCGGGGCTCAGGACTCCAGGCTGGAGCGGACCGGGACGAGTTTCGCGTCGGACTCGGCCAGCTCGTCCGCCGGGACGGAGTCCGCGACGATCCCGCACCCCGCGAACAGCCGTACGCGTGATCCGTCCTCGAGTACTTGAGCCGAGCGCAGGCCGATGCCCCACTCGCCGTCCCCGTTGGCGCCGATCCAGCCCACAGGGCCGGCGTAGCGCCCGCGGTCCATACCCTCGATCTCCTCGATGAGCTCCACGGCATCGGTCGTCGGGGTGCCGCCGACAGCCGCCGAAGGGTGGAGAGCCGCCGCGAGCGAGAGCGCGC # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAAGCGGGGATGATCCC # Alternate repeat : GTGCTCCCCGCGTAAGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //