Array 1 1782-2287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGVH01000058.1 Photorhabdus temperata subsp. temperata Meg1 MEG1DRAFT_contig_57.58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1782 28 100.0 32 ............................ AAATGTTGCGATTAGCGTTCAGACATAAACTA 1842 28 100.0 32 ............................ ATTTGGTCATTGATGTCAACACGTTCTATGCA 1902 28 100.0 32 ............................ AACAATTAAAGGCCAAGCCTGATGTATTTATC 1962 28 100.0 32 ............................ AACAAACACTATGAATCCAGTCATATACATCA 2022 28 100.0 32 ............................ ATATGCTAAAGCCGACGCTTGTGGATTATTTA 2082 28 100.0 28 ............................ TTTCTATGAAATCGGGAACCAGGTCGTC 2138 28 100.0 32 ............................ TGGCGGAATACTAAAAAGTGATTAACATTAAT 2198 28 100.0 32 ............................ CAACGCGAAATATCTCGCTTACTCACCGATTT 2258 28 92.9 0 .................T..T....... | A,G [2280,2283] ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTATACCCAAGGATAGTCTGTATATATGCGGAGAAAATAAGCCAATAACAGTGAAAAAGAGTAAATTTACGGCAATCGAACAAGAGAGGGCTTTACATCTGTCTTAGTGCTGTTTATAGTGCACGCCATTGCGGAGGGGTGGCCGAGCGGCTTAAGGCAGCGGTCTTGAAAACCGCCGATGGGAAACCATCCGAGAGTTCGAATCTCTCCTCCTCCGCCACTTCTTTCTAACCTTATGTTTCTAAATAATTTTCCTAAGATTCGCACCTTATTGTTACACATGAGTGTACCACGTCGTTTGGAGAATTCATTCGTATGTGTACTCATCTTTATCATAAATGATGATGTTTTCGCAGTACCCTAATTTATACCCTTTTTTTGCATATAATCTTAATATATTGATTTTAAAGAAAAATAAAATGTCTCTTATAAAAAGGGTTTTATCACTTTCTAACCATTATGTTCTTTGATAATCAATAGATTAGAGTTAATATGTAACA # Right flank : ACTCGGAGCTATCCCTGTTTTTGCAAAGTGTTATGTAATAATTTAGCAAAGAATTGTAAATTTTTTTGATTTTCATTTGCGATATTTTACCTTGTGTAAAATTTATGCATAATATTTCCATAAATGAAATTAATTATTTAGGTAATTTTTAAATTATGGATAACAACTTCTCTCCGAGTGACCTAAAAACGATTTTGCATTCCAAGAGATCGAATATTTATTACCTGCAATATTGTCGGGTATTAGTGAATGGTGGCCGTGTTGAATATGTCACTGATGAGGGAAAGCAATCACTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGGACTTCTATTACTCAGGCTGCAATGCGTGAATTCGCCAGAGCGGGTGTTCTGGTTGGTTTTTGTGGCGGCGGTGGAACACCGCTGTTCGCAGCTAATGATGTTGAAGTTGATGTGTCTTGGCTAACGCCACAAAGTGAATATCGCCCTACTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13652-14338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGVH01000058.1 Photorhabdus temperata subsp. temperata Meg1 MEG1DRAFT_contig_57.58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13652 28 100.0 32 ............................ ATAGTTTTCTGATTTATTAATATCGAGTATTT 13712 28 100.0 31 ............................ CCCCAGAATGATAATCTTCATTCGATATGTC 13771 28 100.0 32 ............................ GCCCCAGAATGATAATCTTCATTCGATATGTC 13831 28 100.0 32 ............................ GCCCCAGAATGATAATCTTCATTCGATATGTC 13891 28 100.0 32 ............................ GCCCCAGAATGATAATCTTCATTCGATATGTC 13951 28 100.0 32 ............................ GCCCCAGAATGATAATCTTCATTCGATATGTC 14011 28 100.0 32 ............................ TCTGGCTTCAAAACTCCATGTTATTAAAACTC 14071 28 100.0 32 ............................ TCATTTGCCGATTTGTTGCTGTATCCAATTTT 14131 28 100.0 32 ............................ TGTTATTCATAAATTTTTTATATACTTTAATC 14191 28 100.0 32 ............................ TGTCTAACTGTGAGAGTTCCATTTCGTTTTTG 14251 28 100.0 32 ............................ AATCGCATTCAAGTGCATTATCTCGTTCCGTG 14311 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCGTTGCAGGATTTACAGGCGCTACCTTGGTTAAAAGGGCTCAGGGATTATACGGAGGTGACCGATAGCCTGCCAGTACCTCAAGACACTCAATATCGTTGTGTTAGCCGGGTACAGGTTAAAAGTAACGTAGAGCGGCTTCGCCGTCGTTCGATCAAAAAGAGGTGGTTAACTGAGGAACAAGCTCGGCAATGCATCCCAATAAGCAAAGAACAACGTACTGATTTACCGTTTCTGAGCCTTAAGAGTTTGTCATCAGGGCAAAGTTTTCCATTGTTTGTCGAACAGGGACCAATAGAAGACAGACCAACACTAGGAGTTTTTAGTTCTTATGGATTAAGTGCATCAGCTACCATCCCCTGGTTTTGACCCTTTTTTAGCGGTTAATTATAACCTTTTGATTTATTTAAGAGATTAGCCGCTGCTTCTAAAAAGGGTTTTTCCGCTTTTTTTAACTATGCTCTTTAATAATCAGTAGGTTAAAGTTAGTATTTAACT # Right flank : ATGCTGGGTTAGATCTATACCCACAACTTTTATCGTTTCCGTGATGCTGCTCCCCGAGAACGTAGTTAGTTCGCATTAATTTGGTACATTATTATTCGTCGGGGAAGGATGTTCATTACATCACTACAATTTCCGGTGTTAAATAGTTAAAAGTAAGGCTGACAGATACAAACCGATACCAAAAGAGACATGTGCGACAAGGCTACGTAGTCTTGCTACATGAGGTTTAGGTGTCTTCGAGGCTGCAAATCCGAAACCGAAACAGGGTTGCATAATAAAGAAGGGGGCAACTGTTGAAATCGCGCCCATTATAATCGCGGCCAAAAGGGTCGGTGAGTCTGTCCAGCTTATTCCCATAATGACAATAAACAACCAGGTAAAAATAATCCCAATCAGGTAATGTGCTGTCCAGCCAAGTATCTGTTCGCCAATAATAGGAGGAGATTGTGTGATAGTGTTATGACTTATTCTCCCTTTAGACAGATGTCCAATCCAGCGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //