Array 1 1-1412 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIPM01000127.1 Vibrio cholerae strain HE46 NODE_86_length_1472_cov_381.86_ID_171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 33 ............................ ATATAACGATCATAGTCGTTATTTTGTTCGCTT 62 28 100.0 33 ............................ CGGACTCAGAACCACCGATTAACAGGGTATGTC 123 28 100.0 32 ............................ TCTCCGGTGCGTTTGTTTACCCATTGCTTGTT 183 28 100.0 32 ............................ CGGATGCAAATCCCTTTTCTATCTACTATTGT 243 28 100.0 32 ............................ AGTAAATCCTTTGAGTCACCGATTAAAGTTTG 303 28 100.0 32 ............................ ATAAGGCATATCAATAGCACGCTCTTGCAAAT 363 28 100.0 32 ............................ ATTAGGCGCAGGTAGGCTAGCTTGATGCTCAG 423 28 100.0 32 ............................ GTTACTCCGAGAGCTTCCCCGATTCGCATGGC 483 28 100.0 32 ............................ AAACTCTCCCGCCACGCTAGGGAATCCACGGT 543 28 100.0 32 ............................ CCACATCCAACCGACAACGGTCGTGGTAAATT 603 28 100.0 32 ............................ TTCCAGTTGTTTGCTCGCTTAGTTCGGTTTGA 663 28 100.0 32 ............................ GACATAGCGGCTCCCATATCTACTGTTGTTTT 723 28 96.4 32 ...........C................ ATGATCGCCGTCCTTGTTTGATGGCTCTTGCA 783 28 100.0 32 ............................ TCACGCATGATGAAGTTTTCATAAGCGGTGGC 843 28 100.0 32 ............................ ACACGGCAGGTGTCACAACAGCAGCACGAACC 903 28 100.0 32 ............................ GGCTCAAACTGTTGTTGGTATTAAAGCGGAAG 963 28 100.0 32 ............................ ATGAGTGCTGCCACTGGCCGACTAACCAACCT 1023 28 100.0 33 ............................ ATATAACGATCATAGTCGTTATTTTGTTCGCTT 1084 28 100.0 33 ............................ CGGACTCAGAACCACCGATTAACAGGGTATGTC 1145 28 100.0 32 ............................ CGTCGGAAGTGGTCAGCGACTGATATTAATGG 1205 28 100.0 32 ............................ TGCTGCAAGCCGCGAACTGACCACGGTTAAAA 1265 28 100.0 32 ............................ ACACGGCAGGTGTCACAACAGCAGCACGAACC 1325 28 100.0 32 ............................ GGCTCAAACTGTTGTTGGTATTAAAGCGGAAG 1385 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : ATGAGTGCTGCCACTGGCCGACTAACCAACCTGTTCACTGCCGTACAGGCAGGTATCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 89917-93488 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIPM01000008.1 Vibrio cholerae strain HE46 NODE_10_length_153561_cov_281.793_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89917 28 100.0 32 ............................ ACCAAGCACCATTTACCGGGGTTCACTCAAAC 89977 28 100.0 32 ............................ GCAAGGGGCCGCTATCACGCGTTATTCGCCAG 90037 28 100.0 32 ............................ GTCCTTGCCTTTTCGGAGAACGAGAGGCTTAC 90097 28 100.0 32 ............................ CGTCTGAGGTCATAGCTGAAACGCTTTCAAAA 90157 28 100.0 32 ............................ TCCAGTCAATTTTCACAGCCGCGAAAAATAAA 90217 28 100.0 32 ............................ GACTTGCCCCGCTTGAGTTCTTGAGTGTTAAC 90277 28 100.0 32 ............................ GGTCATGTTATCTACGTCGAAGCTCATTAAGA 90337 28 100.0 32 ............................ ACTCAGGCGAGTTTGGTGTGTGGTAAAGCGTT 90397 28 100.0 32 ............................ ATCTGTGTGTGTGATCGGCATTTCTGCTAAAA 90457 28 100.0 32 ............................ AGCCACGAGAGCTTGACCAGTCGGAATGCGAC 90517 28 100.0 32 ............................ TAGCGCTTCCTGCGCCGAAAATTCCAAACGAT 90577 28 100.0 32 ............................ AGACGGTGCAGTGTGGCTAGGTTTGCGAGCTG 90637 28 100.0 32 ............................ AGAGCGACACCACATCGACATTGTAGCGATTT 90697 28 100.0 32 ............................ ATCCAGTTGATGAAAATGGAAACCCGATTAGC 90757 28 100.0 32 ............................ TCTGAAATCAACCAAAAATCCTTTGTTACCGT 90817 28 100.0 32 ............................ ATGTGGCGGCGGTCATGGCAATGGTGCTAATG 90877 28 100.0 32 ............................ TTTCTCTCGCCAGTCTTCTACCGAACCATCGG 90937 28 100.0 32 ............................ TCGTAGTCCGGCAAAGATTTGAAGCGTTTGTG 90997 28 100.0 32 ............................ TGTTCAACAGGCTCATGGCTGAAAATGAAACA 91057 28 100.0 32 ............................ GTCCTGCGTCTGGTTTCGATACGGGCTAGAGT 91117 28 100.0 32 ............................ ATACCGTCGTCAGGGCGAGCCGGCAAGCCGCC 91177 28 100.0 32 ............................ AAGATGGAAGAAGAGCGCCAACAGGCTGAAGC 91237 28 100.0 32 ............................ AGTGCGCGGAATACCGGACACGTCGAAGCCTA 91297 28 100.0 32 ............................ CTGGAAAAACTCACCGTGTGGGACGCCGTTCG 91357 28 100.0 32 ............................ AACCTGCAAAGTGACGCCAATTTAGGGCGTCA 91417 28 100.0 32 ............................ TGCCGGAGTGCGCTGATACAATCCGGTCACGT 91477 28 100.0 32 ............................ AGAATGGCGACATTTGCGAATCGTTGGATAAC 91537 28 100.0 32 ............................ AAGCAACTCAGAACGATGGGGTATCACCATGA 91597 28 100.0 32 ............................ TAAATGGACATTCGAGCAAACGCGCCGAACCG 91657 28 100.0 32 ............................ CTCCATCTCAAACCAACCCTCTGGAACGTCAG 91717 28 100.0 32 ............................ TGTAGTTCAGACTCGAACTGACCAAGGTATTC 91777 28 100.0 33 ............................ ATATAACGATCATAGTCGTTATTTTGTTCGCTT 91838 28 100.0 33 ............................ CGGACTCAGAACCACCGATTAACAGGGTATGTC 91899 28 100.0 32 ............................ TCTCCGGTGCGTTTGTTTACCCATTGCTTGTT 91959 28 100.0 32 ............................ CGGATGCAAATCCCTTTTCTATCTACTATTGT 92019 28 100.0 32 ............................ AGTAAATCCTTTGAGTCACCGATTAAAGTTTG 92079 28 100.0 32 ............................ ATAAGGCATATCAATAGCACGCTCTTGCAAAT 92139 28 100.0 32 ............................ ATTAGGCGCAGGTAGGCTAGCTTGATGCTCAG 92199 28 100.0 32 ............................ GTTACTCCGAGAGCTTCCCCGATTCGCATGGC 92259 28 100.0 32 ............................ AAACTCTCCCGCCACGCTAGGGAATCCACGGT 92319 28 100.0 32 ............................ CCACATCCAACCGACAACGGTCGTGGTAAATT 92379 28 100.0 32 ............................ TTCCAGTTGTTTGCTCGCTTAGTTCGGTTTGA 92439 28 100.0 32 ............................ GACATAGCGGCTCCCATATCTACTGTTGTTTT 92499 28 96.4 32 ...........C................ ATGATCGCCGTCCTTGTTTGATGGCTCTTGCA 92559 28 100.0 32 ............................ TCACGCATGATGAAGTTTTCATAAGCGGTGGC 92619 28 100.0 32 ............................ ACACGGCAGGTGTCGCAACAGCAGCACGAACC 92679 28 100.0 32 ............................ GGCTCAAACTGTTGTTGGTATTAAAGCGGAAG 92739 28 100.0 32 ............................ ATGAGTGCTGCCACTGGCCGACTAACCAACCT 92799 28 100.0 33 ............................ ATATAACGATCATAGTCGTTATTTTGTTCGCTT 92860 28 100.0 33 ............................ CGGACTCAGAACCACCGATTAACAGGGTATGTC 92921 28 100.0 32 ............................ CGTCGGAAGTGGTCAGCGACTGATATTAATGG 92981 28 100.0 32 ............................ TGCTGCAAGCCGCGAACTGACCACGGTTAAAA 93041 28 100.0 32 ............................ ACACGGCAGGTGTCACAACAGCAGCACGAACC 93101 28 100.0 32 ............................ GGCTCAAACTGTTGTTGGTATTAAAGCGGAAG 93161 28 100.0 32 ............................ ATGAGTGCTGCCACTGGCCGACTAACCAACCT 93221 28 100.0 32 ............................ GCGAGAGAGCACAAACGCAAGCGCACCCAGTT 93281 28 100.0 32 ............................ GACTCCAGTGTTTCAACCGCTTCGGGTGGTAA 93341 28 100.0 32 ............................ TGCGTAACTTCGACGATGTACTGGCAAGCATC 93401 28 96.4 32 ...........C................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 93461 28 89.3 0 ..........A..............TT. | ========== ====== ====== ====== ============================ ================================= ================== 60 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGTTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGTAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCTAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCTGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //