Array 1 36552-37959 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBM01000009.1 Pseudomonas aeruginosa strain env005 NODE_9_length_229251_cov_14.9868, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36552 28 100.0 32 ............................ TCCATCGCCTACAAGGTAGCCCGCTCGAAGAC 36612 28 100.0 32 ............................ TCCCACCGCCCGCTGGAGAAGCCGCAGTTATC 36672 28 100.0 32 ............................ AGTCCCAGGGCGCCGATGGCGTTCGGGTCTAC 36732 28 100.0 32 ............................ TGGGCGCGTCGTTCCGCTGCCAGGCGCTCGGC 36792 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36852 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 36912 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 36972 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 37032 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 37092 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 37152 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 37212 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 37272 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 37332 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37392 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37452 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37512 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37572 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37632 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37692 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37752 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37812 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37872 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37932 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 24 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48072-46484 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBM01000009.1 Pseudomonas aeruginosa strain env005 NODE_9_length_229251_cov_14.9868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48071 28 100.0 32 ............................ AGTGAAGGGAGGGGTTAGAGAAATCCAAGATC 48011 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 47951 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 47891 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 47831 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 47771 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 47711 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 47651 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47591 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47531 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47471 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47411 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 47351 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 47291 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 47231 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 47171 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 47111 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47051 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 46991 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 46931 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46871 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46811 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46751 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46691 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46631 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46571 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46511 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //