Array 1 126549-123959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMYM010000001.1 Escherichia coli strain 18-47-23 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126548 29 100.0 32 ............................. ACACTTTCGACAAAAAACTGGATGATCTGATA 126487 29 100.0 32 ............................. AGTTTTTAAATCAGATGGAAGAATATCAAGGA 126426 29 100.0 32 ............................. AGCTTCTGGCTGGCGACTCTCCCGAACTCTAC 126365 29 100.0 32 ............................. TGATTTCTATACCCCCGGTAGCGCGGGAGGGG 126304 29 100.0 32 ............................. TATTCTCCACGTATATTAATCAGGAAATAAAA 126243 29 100.0 32 ............................. CGCGAGCAATAGATCGTATTAAATTGAAGTAA 126182 29 100.0 32 ............................. CGGTAGAGAGGGCGTTGTTAGCGGCGCAGAAA 126121 29 100.0 32 ............................. CGCGTGCAGAAATTTACAAAAGAACGCGATAG 126060 29 100.0 32 ............................. TATTCTCCACGTATATTAATCAGGAAATAAAA 125999 29 100.0 32 ............................. TGGTTGTTTAGGCGGGATTTATTGCGTAAGTC 125938 29 100.0 32 ............................. GACCAGTACATCACTTGAGGCAAATACTCAGT 125877 29 100.0 32 ............................. CCGCAGCACCAGCCGCGACGGCAGCCACCCAC 125816 29 96.6 32 ............................C AGATAGGTCAGAGCGCGCAAGATTGGGCGAAA 125755 29 100.0 32 ............................. CAGATATTATAATCTTGCTCCCGTATATAGCT 125694 29 100.0 32 ............................. GCGGCGATTTTCTCGGCTCAAGGACTGATGGT 125633 29 100.0 32 ............................. ACAACAGCGACGGAACAGGGCAACGCCTTTAC 125572 29 100.0 32 ............................. TTAAATATATCGTTACCGCTCCTGAATTTATT 125511 29 100.0 32 ............................. CGAAGCTCCTTCCGTTGATTACCAAAACGTTG 125450 29 100.0 32 ............................. TGTCGAGCAACTACATGTTTGGTGTTGATTGT 125389 29 100.0 32 ............................. CCGGGCCGCTGAACGTTTTCCCCGTCGCACCG 125328 29 100.0 32 ............................. AAGGCGGCAGAAATAAAGTAATAAACGGATTG 125267 29 100.0 32 ............................. GTGGACCGGAGGGCGACAGGCAAACCTGTTTT 125206 29 100.0 32 ............................. CATCTGCACCAGCTCGGCACTGATTTGATCAT 125145 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 125084 29 100.0 32 ............................. CGCCGCGACAAATAATCTCAGCACACCTAAAA 125023 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA 124962 29 100.0 32 ............................. GGCTGCATATGAGCACGAGACACCCAGTAATT 124901 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 124840 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 124779 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCTCGTCACGGCTTA 124718 29 100.0 32 ............................. CAGTAAATAACGCATTTGATGTTTGTAGTATT 124657 29 100.0 32 ............................. ACATCGGGTCAATGTTGAAGTCCTGCCCTACC 124596 29 100.0 32 ............................. GTTCTGCGCAGGGTTCACGAATGCGTGTTAAC 124535 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 124474 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 124413 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 124352 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 124291 29 96.6 32 ..................T.......... CCGTGGGCTAAACGATTGACGCGGCCTGACGG 124230 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 124169 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 124108 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 124048 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 123987 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.5 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152920-152097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMYM010000001.1 Escherichia coli strain 18-47-23 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152919 29 100.0 32 ............................. ATGTCCCTTTTTTGTGGACTGCGGCTATTATG 152858 29 100.0 32 ............................. GGCTTTCGCCATTCCCCTTAACTCGTCTGAAT 152797 29 100.0 32 ............................. TAAAGATGCGCTGGCAACTATCCTGAAAAAAC 152736 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGAAGCG 152675 29 100.0 32 ............................. AAAACCAACCAATTGCGGTTGGTTTTTTTATG 152614 29 100.0 32 ............................. AATTACATACTTTTTTAATCAAGGGCATGAAC 152553 29 100.0 33 ............................. TCGGGCGCATTGGGGTATATGAAGACAGCAAGC 152491 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 152430 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 152369 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 152308 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 152247 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 152186 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 152125 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //