Array 1 60742-59224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEF01000027.1 Bacteroides fragilis str. S23L17 gbfS23L17.contig.26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 60741 35 100.0 33 ................................... ATCCTTTGTTTATTATAATTTCGATTATTAACC 60673 35 100.0 33 ................................... TTATTTCTGATTTTGCTTCTTGCTCTGACAATC 60605 35 100.0 37 ................................... TATTCTTTGATGCCGTGATTTATCACACGATTAAACC 60533 35 100.0 36 ................................... AGTAAAAAATTCCTAAAAACAGAACTATGGAAAATT 60462 35 100.0 35 ................................... AAATCTCGGAAGAACTTATTACAGAGTTGTCAGTC 60392 35 100.0 37 ................................... CCACGATTTATGTCGAGGTCGTAAAGAGAGAAGGAAT 60320 35 100.0 39 ................................... AAAGGCGAAGAGACAATTGTAAAGTCCTCTTCCTTTTAA 60246 35 100.0 34 ................................... ACTTACTGTGCAATGGCGGCGAAGCACAAAACCT 60177 35 100.0 34 ................................... ACGGAATTTTTATGATAGACAATGCTCCAAAAGT 60108 35 100.0 37 ................................... TAAAAAATTAACTCCGTATTTGGGAAATGCCAAAACG 60036 35 100.0 34 ................................... AACCTTATCCAAGAAAAAAGAAATCGCTGCTGGT 59967 35 100.0 33 ................................... AAATATGGCGCTGTTTTGGGTCTCGAAAAAAGA 59899 35 100.0 37 ................................... TTCCTATTTCGGCAACGTTCAATTGAAGTGGGAACTT 59827 35 100.0 36 ................................... AGAAAATAAGGAGCGAATTGCAGAGGTTGGCTGAAA 59756 35 100.0 36 ................................... ATATTTTGACGTGGATTTGGAATGCAATCATATGGA 59685 35 100.0 38 ................................... GCAGCTTAATAGAAAATGTGAATGATCTTGGTTTTGAT 59612 35 100.0 35 ................................... TTCAGTCGGTATCAAATGGAGATTAAAATCCAAAT 59542 35 100.0 36 ................................... TTTGCGAGACGAGATAAAGAAATTTATTAATCAGGT 59471 35 100.0 35 ................................... TACAGGGATAAATTTTGATTATGAATTGCCGAAAT 59401 35 100.0 39 ................................... ATTATGCGAGACCGGTGGTGGGCAATTAAAGAAAAACTT 59327 35 100.0 34 ................................... TTGAAGAAATCAAGTCAATTCTCTTCTAAATTTC 59258 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 22 35 100.0 36 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGTATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1058-2178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEF01000053.1 Bacteroides fragilis str. S23L17 gbfS23L17.contig.52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1058 47 93.6 30 ...A......A.............................G...... TTGATAAATGCGAGTACGCAAACAAACTGT 1135 47 100.0 30 ............................................... AAGCCGGAAGAAAAACAGGCTATCACTTAC 1212 47 100.0 30 ............................................... AACCTTGTCTATTATTACCAATAGCGTTAA 1289 47 100.0 30 ............................................... ATGGATTTCGTAACAAAAAACAGAAATAAT 1366 47 100.0 29 ............................................... AAGTAGAAGAAGCAGTGCCAGCTGAACCA 1442 47 100.0 30 ............................................... TAGCTGCTAAATACAGTAATGAAACACTTG 1519 47 100.0 30 ............................................... CTTCTCGGTACGGTAATATCCCCGTTTGAC 1596 47 100.0 29 ............................................... TCCAAAGATCTTTGTTCCAGTTAGCATAT 1672 47 100.0 29 ............................................... CACGTAATCCAAAAGCGGTGTAGCGTGGT 1748 47 100.0 29 ............................................... TCTTTACTCAGCAGGCCTACGGCCGCTTC 1824 47 100.0 30 ............................................... TTCTTAACCGATTTAACGAAAGGGTTGCAG 1901 47 100.0 30 ............................................... AAACCGTTCAAATACCTACGCAATTGCGTA 1978 47 100.0 30 ............................................... TGTTATTCTAAATTCGACTGTCAACGTGCC 2055 47 100.0 30 ............................................... ACGATGCGTTTCAAAAAGTACAAAAACGAC 2132 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCTAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGCGTGTTAAATCAAGTAATAGGAAGAGAGGAAACAAAAGGAGAAAAAGAATTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCCAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CAGATTTTACATAACATATTGTCCTTCAATAAGTTAAGAGTAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //