Array 1 22642-22315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBC010000023.1 Campylobacter canadensis strain L281 L281_contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 22641 38 100.0 34 ...................................... ACAAGGAACATAAGTCTCTTGTAGTTAGCAAATC 22569 38 100.0 34 ...................................... AAGCTATTGGTGGTGGCATTCCTAATCCTATAAA 22497 38 100.0 35 ...................................... GCTATTAATAAACAAATTAATATTAAAAAAGATAT 22424 38 97.4 34 .....................................T GTGCAACAACATCACTTCTTCTTGAAGTTTTTAG 22352 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 99.5 34 GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGA # Left flank : AATCGTGGCTGGTGGTGTGCTAGAGCTTG # Right flank : GCTAGATAAACTTGTCTAGCTTGTAAGGATTTGAGCTAACTTAAAGTTTGCTTATTTTTCCACTTTGAAAATTTCGGCAAAAAACAGCCGTTTTGTGGAAAAATAAGAAAAATTTAAGCTTATGGTTAAGAATTTTAGCCTAATATATCAACTCAAACCTAATTCTAGCAAAATATTTAAGAGTTTGAAATCACCACAAGGTTGGTAAAATATCGGGCAACTGGCTTAGCCACCCCGATAAATCTTATTAGTTAATCTTTGCTAAATAAAATTCCATTAAAACATAAATTTAGGAGAAATCATGAAAACTCACATTAGTATAGATATGGGAGCGAAAAATAATGGGGTGTTTTTAGCTCATACAAAAGATGGCAAGATTATAGATAAAACTGCTACGAATTATATCTTTGAACCATCTTCTATAAATTTTTTAAAAAAAGATAGAACCAAGAAAAGACATCAAAGAAGAGGTTTTAAAAGAACAAGACTAGCTAGAAGGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 38-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBC010000015.1 Campylobacter canadensis strain L281 L281_contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 38 36 100.0 33 .................................... CCATAAGGCTTTCATATTAAAACTAACCTCATT 107 36 100.0 34 .................................... TTGTAATCAGGCTTAAATTCTTCATGGTATTGCT 177 36 100.0 35 .................................... CGCACGGCGTGTGTCCTTTATTATCCACTCCCCTT 248 35 91.7 0 ...............................-..GG | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 97.9 34 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TTTTACCTGCCTCAACGGCGTATTGTGTGGCGATGAAG # Right flank : GTTCCTGTTACATTTGGGATATAATATTTTCTTAAAGCTATTTAAATGATGTTATTAAAAGAATTATTTATTTAAAGTTTTTAAAAGCTTAATATGCCTTCTATTAAAATATAAAAAGTAATAAATATGATAAAAAGTTATAAGCAAAATCACCACACTTATTTTTTAGTTTCTAATATTATTAGCACATTTATTAATTTTTATATTTATAAATAATTAAAAAATTAGGCAACTTACCTTAGATAAGAGTTTTTAACATTTTATTACTTTTATATATAGCTTTGAAAGTTAGTAACAAAAAACAAATACGAATAAGGATTAATATTGTAAAAAAATTTAATTTTTTTTATTAATACTGTGTCTTTATTAACCGTGGGGGGGGGTATAATGATATGAAATATAAAGAAAGGAGTAAAAGATGGATAAAGCAAATGCAAACCATAAAGCTAATCAAGCAAATGCAAACAAAGGTAGTGCTGGACAAAATAAAGCACATTCTC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 34-427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBC010000033.1 Campylobacter canadensis strain L281 L281_contig00033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 34 36 100.0 36 .................................... CCATACCCCAATAATGACTCGTTGTGGTGATGTTCT 106 36 100.0 36 .................................... ATCAGAAGGCTTCATTTCATATCTATTATAACTTTT 178 36 100.0 36 .................................... TTTTTGTAGATGGTATCTACTCATAAATGCTTTTTT 250 36 97.2 35 ............T....................... ATAAGCCTTGTTTTGCTTTAGCTATTTTTTTATTC 321 36 97.2 35 ............T....................... TGCAGTCTGCCATTGGCATTCCGCACTCGTCTAAT 392 36 94.4 0 ............T......................A | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.1 36 GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC # Left flank : GACAACTTAATATTTTTTAGCAGCTGATCTACCG # Right flank : ACTTAGAATACTTTGGGATAAGATAAAAGATATTAAAAATCCTATGTCGCACTGTACTACTGAAAATATCAAATTTGATGTAAATAAAGAACTTCAAAGTTGCTTAGATGTGTATCAAAATTATATTATAAAAAATGATGTTTTAGCTAAGTAGTTTTAAGGCTTTTGCCCTAGCCTACTTAACTTTTTGTATTAAATAGTTATTATAAACTATATTATCTTTAAAACTCCCTAAATTTTATATGCTTAAAAATGCTTTGTTTTACACCGTTTTCATCTTTTAAAACCTCTCTTTTTGTGGTGGCATAAACGGGTTTTAATGATTTTGCTTTAGCATAATTTATAAGCTTAAAGCATAATCCAAAATCACCGCTAATAAGCAAAAAATCACCTTTTTTAGTATTTTTATCAATGTATTCATAAAAATCCTTTGCGTATTCATCTAAGCTATCAAGGCTGGGCGGAACATTTGAAAACCTAGTTTGTAAATCCTTTGGCAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 580-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBC010000084.1 Campylobacter canadensis strain L281 L281_contig00085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 579 37 97.3 35 .......G............................. TTTAATGACAAGAAGTTGTATTCAATTGCCTATGG 507 37 100.0 35 ..................................... ATTGGCATCGTTGGCACCGATTCAGCACTCGAAAC 435 37 100.0 35 ..................................... TCTTCTAAAATTGAAGTTTCAAGTAGCTTCATCTC 363 37 100.0 35 ..................................... CAAAATTTGCGATATAATGACGATAATGAACTGAA 291 37 100.0 35 ..................................... CGATAAACCGAATTGTCTGCATCTTTAAATGCTAG 219 37 100.0 35 ..................................... TATGAAGTTGGAAAAAGATGTTTAATTCGTACTAC 147 37 100.0 36 ..................................... ATCAACGTTAATTAAATATTCGTTATTAACATATGA 74 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 99.7 35 GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Left flank : AACACACTGCTTAATCCGTTCTTTAATGTAAAAATACTACTTGCTAAAGAATATAGCTTTTTGCCAAACTAACAATTAAGACTTACAATAATCAATATATTTTAGATAAATAATTTGGTTAGAGAAATTAAAGAAGTGCAGTAAGCAAAAGATAAATAAGAAGAAATTG # Right flank : GAGGGTAATGAAAAGGTTTTAAGGGCAAGATTAAGCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 71027-70290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBC010000007.1 Campylobacter canadensis strain L281 L281_contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 71026 36 100.0 37 .................................... TATGGTGTATCGTTTACAACGATACATACTCCATAAG 70953 36 100.0 35 .................................... CTCTTGTTTAAGACAACAAAAGCAAATGAACAAAT 70882 36 100.0 33 .................................... TCATAACCTAAACTATTAAAATAAAAATCAGAG 70813 36 100.0 33 .................................... AAAAAATATTTGGAATTCATTTTTTACATTTAC 70744 36 100.0 35 .................................... ACATTGTTCGCTTCGTCGTTCTCCAGCCTTGAAAA 70673 36 100.0 34 .................................... TGAAATCTTTTTTAAGACCGATATAGTGACTTGT 70603 36 100.0 33 .................................... AACATTATTTCTTTTTTTATGAAATCTTTTTTT 70534 36 100.0 31 .................................... ATTTATATTTAAATCAGCTTTGAAAATATAA 70467 36 100.0 33 .................................... GGCATTCGCCACCACAGAAATATATTTGTTTCC 70398 36 100.0 37 .................................... TTTGATAAACCTATACCTTTTATCACTTTGTCTACTT 70325 36 91.7 0 ..C......T...A...................... | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 99.2 34 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TAAATAACTTTCTAATAATTGCAATTCACTAATT # Right flank : ATTCGCCAAATTATTTTCAAAACTTTCATCAGCTTTTGTGCAAGAAAATTACTATTTATTAGATTAGTAAAAAGAAGTAGCAAAAATGATTAAGCTATCTAAATACGAAAACGCAAGTAAAAATGAGATTGCAAAAGTAATTGATAAATATTTTGCTAAACTTAAAGAATAAAAAAATCAAAAAAACACAAAAAGCTATAAAGCAATTACAAAAGTTTTTAATCAAAGCTTGAAAGCTAACAAAACTAAAAATTATAAGTGGCTAAAAGAATATTAAAAGTAATGAATTTATAGAAGCACTAAAAGAAGCTGAAGAATTAAAATAGCTTATTTGCGTGAAGAAGTGCAGTATTTAGAAGTTAAAGAATTTGTTAAGGAAAGTATGAAATGATAAAGCTAATTATTAAAGAACAATAGCATATAAAATAGCTTTAAAAAAATTAGGTAAATATAATAAAAAACCAGCATACAAAATCATTCATTGTTTAGCTAATGCTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //