Array 1 12959-13657 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBL01000267.1 Streptomyces cacaoi strain NRRL B-1220 NRRL_B-1220_contig_267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12959 29 100.0 32 ............................. CACCCGCCACTGGAGATCGCCCAGCTCGGTGG 13020 29 100.0 32 ............................. GCCGCCGCTGCTGCTGCGGCCGGTGTCTCCGA 13081 29 100.0 32 ............................. GAGGAACCGGCTCCGAGCTTGTCGGCGACGCT 13142 29 100.0 32 ............................. TCCACCTGGACGCTCGGGGAGAGCTGCACCTC 13203 29 100.0 32 ............................. GGCTGAGCGTGAGACCCCGAGCTGTTTGGCGA 13264 29 96.6 32 ............................G CCGGCCAGCGGCACCGTGACGTAGGGGCTCTG 13325 29 100.0 32 ............................. TGCGGGAGCGGGGCCACGCCCTACCCGGGTCC 13386 29 100.0 32 ............................. CCTGGGTCTGCCACTCGTGCTTGCGGCCGACG 13447 29 100.0 32 ............................. CAGGCAGACCTCATAGACTATGTTCCCTTCCC 13508 29 93.1 32 ........T.....G.............. ATGTCTTCACCATGCGGCCACACCAAGGCCGA 13569 29 100.0 32 ............................. GACCCGATCTCGAAGATTGCGCATCATGAGGC 13630 28 75.9 0 .A.T.......C.....A...G.A.-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCGGCGGAGGAGCGAACACCTAGTCGCGGCCGCAGCCCCGAGAGCCCGTGATGCACAGGTAGAGGCCAGAAGAGCCCGCGTTGAGGTTTGATCCACGAGACCGGGTGCCCCGGCTCCCGCTCGTGTAGGGAGTCCTGTCTGCTGCCGAGGCGGCACCCCGATGCGTCTCCGCACCCTTGCGGTCACCCCTGCCTTCCGTAGGGTTGAGATGGCCAGGGTGAGGCAAGTTGTATACGAAACGCCAACTGGGTCCTTCGGACAGGTGTGTCGGAGTCACGCACGCCAGGGGAAGCGGAACGAGTCCCCGGGTGCTCCGGCGCCCGGACCGGGCTTTGCCGTTGCGGAGGGCGAAGAGGACGGGGCACGTATGTTGGAGGTTGCTGTACCCGCGATGTTGCGGCGGCCGCTGACCCTTGTGTGACTGGATGGGAGGAATGCCTGAATCCCCGAAGGTTGCTCGAAACGGCCTTCCGGCCGGATAAACCCGCAGCTCACCGAGC # Right flank : CAGGCCCCCGGCTCAGGCCGGGTCCTCCAGGGCCTCGATGAGGAGATGGGACAGGCGGCGGAACTCCTCGGCGTTGGCTCTGTCGAACTTTTCCAGTGCCGGGGCCAGTCGGGCCTCGATCTGGGTGAAGGTCTCGTCGATCACCTTGTGTCCCTTGGGCGTGAGGTGGTTGTCCATCACGCGGCCCCGGGCCGGGGAGCGCTCGACCAGGCCCTCCTCCTGCAAGGTCCGGATGAGACGGCTGACGGCCTGCGGTGTGTGGACCGCGGCGCGCGCCAGCTCTGAAGCGGAGGCGCCGGGTGTCCGCTTCAGTTCGCGCAGCACCGTCCACTGCCCGAGGGTGAGCCCCAGTGGGTGGATGACCTGCTCGATCCGGTCGGCGAAGTGCTGACGGATGATCCTGGACAGCGCACCGATTTCGATCCCCTGCGGCAGCGGGTCGCCCGAGTTCTTCATCTTTGACAGTGTACTCGCCGCGTTCTATATTGAATCGCAGTTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18415-18749 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBL01000118.1 Streptomyces cacaoi strain NRRL B-1220 NRRL_B-1220_contig_118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 18415 30 96.7 31 .............................T CCTGTAGATCGGCCCCGCTGACCAGCGCTGT 18476 30 96.7 31 .............................C AGATGGCCTCCGAGCTGGGAGTCTCCCCCAA 18537 30 100.0 31 .............................. TCACAAGGCTCCGGTTCACATCGCGGTTCAC 18598 30 96.7 31 .............................A GTTCTTCTGCGAGCGTGAAAGGCGCGGCCGA 18659 30 83.3 31 ...G.......A..T..A...G........ CGGGCAGGTCTTCTCGCCCTCGTGCGCAGGG 18720 30 86.7 0 ...G........TGT............... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 93.4 31 GTGCTCCCCGCGCACGCGGGGTTGGTCCCG # Left flank : CTCACTCTCGGCGAATCTGCGCTGGCAGAGCGTCTTCGTCTACACCGTGCCGCCCGCGGCGAAGCAACAGGCGCTCACCGACGTCACGGCAGCCGTGGACGCGGGCGCCCTGCGCGTGGGCGAGGACGCCGGACTGCCCTTGCACCGCTTCCCCCTGGAACGCACCGCCGACGCCCACACAACACTCGAACAGGGCGTCACAGGAAAGGTCCTGCTCGACATCGTCTGACGCCCGACCCTCCCCTGCACACGTCTCCCAAGCGCTACCGTCAACTCCCGCCCGGCCTCTGTCACTTGTCACCGCGCATCCCTGGAGGAAAATGGCCCAGCACCGCCTACGAGCCGGTCCGGCAGCGGTGGAACGAGGCGGCCACGACGGAAACCGGGAGGACAACGATGAGCCGCGCTGGGCGTGTTCGCCCGACATCACCGAAAAGCCCGAGCTTGGCAAAGTGGGTAAAATCCGTGCACCGCTGAGAAGAAACCCCTGGTCGGCTCCT # Right flank : TGCACACCTCCCCGCAGATGCACGACGTGGCGGTGGCCCCCGCACGTGCGAGTCAAGCCGGAACTCCCCCGGCCCCCAGAACCCTCC # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGTTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5365-5941 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBL01000140.1 Streptomyces cacaoi strain NRRL B-1220 NRRL_B-1220_contig_140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5365 29 96.6 32 A............................ CTCACCGCGTCGTTCGTGATCTCCAGATCACC 5426 29 93.1 32 A...........................C CAGGCGTCCGGGTCGGTGCGGCACGGCTCGCG 5487 29 93.1 32 A...........................A CGGAACGTCTTCCCCGACCCCATCGGGCCGAT 5548 29 93.1 32 .....................G......A GTCGCGATCAGGTTGGCTACCGCCGACCTGAT 5609 29 96.6 32 .....................G....... AGCGAGTTCTACCCGCTGGGCACCGGCGGCCA 5670 29 93.1 32 ............T........G....... GAGAACATGTCGATCCGGGTCTCCCTCACGGT 5731 29 96.6 32 ............................T CCCCCGTTCTGAACACGCCCGGGGCGGCCCCC C [5736] 5793 29 96.6 32 .............C............... CTCGCCGCCTCATCCGAGCCGCCGCCGGTCGC 5854 29 100.0 29 ............................. TCGAGGCCGAGCGGAAGGCCCGCGAGGGC 5912 29 75.9 0 AA.G.................C...A.AT | G [5916] ========== ====== ====== ====== ============================= ================================ ================== 10 29 93.5 32 GTGCTCCCCGCACGCGCGGGGATGGTCCG # Left flank : GATCGCTGAGCACAGCTTCCGCACGGCAGTGATCGGTTCCGTGTTCGCGATGATGGAGGGCGCCGACCCGGGCAGGGTCGCGCTGCTGTGCACCTTCCACGACACGCAGGAGACCCGGGTCGGCGACATTCCGTGGATCGGGCGGCGGTACCTCACGGCGGCGAAGAACGAGGATGTCACCCGCGACCAGGTCGCCGACGCACACCCGAAGGTTGCCGCCGGCATTCAGGCCGTAGTCGACGAGTACGAGACCGGCGACTCGATCGAGGTACTCGTCGCTCACGATGCCGACAAGCTCGAATGCATGATCCAAGGTCTTGAGTACCTGGAGCAGGGCTACCGGAACGCTCGCGAGTGGGTCGACAGCACGCGAGCGAAGCTCAAGACCCCGTCGGCGATTGCCCTTGCTGATGCCGCACAGAACATGTCCTCGGTGGAATGGCAGCGCACCTATCTGCGGTAGGTGACGCGAAGGCGCGGAAAGCTGCTGGTCAAGAAGT # Right flank : TGACGAAAGTGCCCCCGCCCGGCCATGTGTGGCCGTGCGGGGGCATTGTCAGCGTGTGAAGTCGAGTAGTGCCAGGGCGAGGGCGCCGACACCGGTCAGCGCAGCCAGGGATGGCAGGGGCCAGCGGGCCCGCTCCAGTGTGCGGAGTCGGGACTCGTGGTCGGCGAGACCGTCGCCCCGCTCGACCGCATCGAGCCGTGCGTCCTGCTGGTCGAGGTGCTGCTCGTGCTCGGTGAGCCGCTGCTCGGTCTGGTCGGTGCGCTGTACCAGCAGCGCCAGGGCGCCGTCGGTGCGGGTGAACCCGACTTCGATCGTGCGGCGGATGCGTTCCAGTTCGACGGCGACGGCGGACGGGTCGGACGGGGGTGGGGCGGTGCTCAGGGGGCGGCCTTGGTCTCCTCGTCGACGATGCCGAGGCCGAACCGGTCGAGCAGCCGCTCGACGGGCGGGAGGGCCATGACGCGGGCGAGTCCGCCCGCCACGGACACGACACACGGAAG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCG # Alternate repeat : TGCTCCCCGCACGCGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9738-10253 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBL01000140.1 Streptomyces cacaoi strain NRRL B-1220 NRRL_B-1220_contig_140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9738 29 100.0 32 ............................. ATCGCTGCACGGCTGAAGATTTCGCTCGGGGC 9799 29 96.6 32 ............................T CCCTCCGCACCGAGGAGACGTGATGTCCGTCA 9860 29 96.6 32 ............................T GTGCACAGGTGTCTCCCACGGATAGAGCGGTC 9921 29 100.0 32 ............................. GTCGACGGGTACCGCCTCGTCTGCTTCGCCCG 9982 29 100.0 32 ............................. CCCAGCAGGAGAAAGGAAGCAGATGCCCCGAT 10043 29 93.1 32 .....................G......A GCGCGCAACCCCCCCTGCGGGGGTTCGGCATT 10104 28 93.1 32 ........A............-....... AAGAAGAGGATGAGAGAGGCGCCGAGTCCGGT 10164 29 96.6 32 .....................G....... GCGGCGATCGAGCCGTATGGCATCGCGGACTC 10225 29 82.8 0 .............C.......C...A.AT | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 GTGCTCCCCGCACGCGCGGGGATGGTCCG # Left flank : TTCGGCGCCTCGCTGAAGATCCCTGCCGCCAACGGGTTCTGGATATTCGACGAACGGCTTGTGATCGCGGAGGACTGGCATGCCGAGTTGCGGCTCGACGACGCCGACAGCATCGCCACCTACTCGCGCGTCTGGCGCACTCTGCGGGAATCCGCCGTGTACGGCGCCGACGCACACAACGTGATCAATACGGCACGGCGGGAACTGAACGCCCGCTGAAGGGTCTTCGGCTGGCGGGACGGCGGCGCGCTGACCGAAGGGCCGAGCCCTCAACAGGCCGACCACGCCCACCGCTACCTGTACGAACGCCACCAGCACGGCCCACCGCGCCCACCGCTCCGCCTGCTCCACTACTGCCTCCTCGGTCGTTGGCAGGACCGTACGCAGGACTGGCTGTCGGGCGTCGTGAGTTGTCCACAGGCGGGCAGGTAAGTCGTACCGGCAGCGGCGAGGTGATGCTGAATACGCCATTCCGCGAGTAACGTCGCTGGTCAGGAAGT # Right flank : TGCCGAAATCGCCCCCGCCCGGCCAGGTGCGCCCGGCCACGTGCGCCCGGGCAGGGGCATTCAGCCAGCGAAGCCGAGTAGTCCCAAGGCGAAGGCGCTCCCAGCGAGGGCACGAGGCAGGGCGCGGTATGCGGATGCTCGCCGCGCCGGGGGCGGAGGGGAGACGGCGCCGACCCGCACCCACAAGGCCGTCTCCCGCCGCGTCCCCCCTCGGCTGAGCGGAGCGCCGGGCAGGGGCGCGTCCAGCCGAGGCGGCACACCCGGCAGGAGCCTCATCCCCGCCGGGGCGGCATACCCGGCAAGAACCCGTCCCAGGCGCGCGACACACCCGGCAGGAGCCCCATCCCAGGCGCGCGGCATACCCAGCAGGAGCCCCATCCCAGGCGGGCGAGCAAAACCCGGCAAGAGCCTCATCCCAGGCGCGCGGCACACCCAGCAGGAGCCCCATCCCAGGCGAGCGGCAGAACCCGGCAGGAGCCTCACCCCAGGTGGGCGGCATG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCG # Alternate repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10000-9543 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBL01000082.1 Streptomyces cacaoi strain NRRL B-1220 NRRL_B-1220_contig_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 9999 30 100.0 31 .............................. CGGCCTTCGCCGACTTGCTGTCGTCGCTCGC 9938 30 96.7 31 ........................A..... GCCGCCTGGAGGTGGTGCTCCAGCGGACGGA 9877 30 93.3 31 ........................A....C CGGTGCCCATACAGCGCCGCCGGGGCAGGTA 9816 30 93.3 31 ..........T.T................. CGTGCTGGATGGGCAGGCTGTCGTCCCAGAT 9755 30 96.7 31 ............T................. TGTACCACTTGCCCTTGTCCTGGGCGAGGAT 9694 30 93.3 31 .....G......T................. TGTACCACTTGCCCTTGTCCTGGGCGAGGAT 9633 30 96.7 31 ...............A.............. AGACTGCCGCGGGCGGCCCGATCGGGGCCCG 9572 30 83.3 0 .............AC......T..AT.... | ========== ====== ====== ====== ============================== =============================== ================== 8 30 94.2 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : CCCCGCGCGTGCGGGGATGGACCCAGGGCGAAACGGTGCTAAGGCAAAGGACACC # Right flank : TTCGGCGGTTACGGCGAGGTGTGCGAGGGTCCTCGATCGGTCAACCGGCGTGGGCGCGGCGGCACTTCGGACAGCGGCACGGTGGCCAGGCCCCGCCCGCTACCGGTCCTCGGACGGGCCGTACGACGCGGCGTGGTGTCCAGGTGCGCCCGCCGTCGCGGGAGACGCGAAGGGTCATCCAGCTCACGGCTGATCTCCCAACGGCCGTGGTCCCAGAACTGCGGCTGCCGGCTCGCTGTTCCTCGCGTACTTGTAGCCGAAATGGCGAGTTGCGCGGGCCGATTGAGCTTCGCCCGTCGGCACCAACTCTCGACGCTGATCGGGTTCCGGAATGAGCTGTCGTGCATGCTGCCGCTTATCGACCATGGGTGTCCTCCCGGTGACGGATGGTGCGGTCACTCAACCCCGGGGCATCCTGGAGGGGCCACGAACCACCCGCGGACTGCATACGACGATGCGCGCAGCGCTTAGTGGTGCCGCATTCCGGACCCGTACCGCGT # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //