Array 1 14206-12982 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALQD01000087.1 Streptococcus agalactiae FSL C1-494 ctg120003231822, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14205 36 100.0 30 .................................... CGATGCTTTGTAATCGTCTCAACACCTGTT 14139 36 100.0 30 .................................... CCGATGGGAAACATGCAGATTGGATTACCT 14073 36 100.0 30 .................................... AATGAATTGTTCTACTCCATTAAACGGGAT 14007 36 97.2 30 A................................... CAAATCCCGCAGAGGGCGGTAGTTTTTAAT 13941 36 100.0 30 .................................... GGTGAAGATTTTATATCAAATAAAGCTAAA 13875 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGT 13809 36 100.0 30 .................................... TTGTTAGTCATGATACTGATTGGATGAATG 13743 36 100.0 30 .................................... CATAAAATCTAAAAAAGAACTGTCTAATTT 13677 36 100.0 30 .................................... CTTTTTCCCAACCAAACCTAGCAATAAGAA 13611 36 100.0 30 .................................... CATTTGATGCGTCAGAAGTGGCAATGCTAG 13545 36 100.0 30 .................................... ATGAAAACCAAGAACCTGTTGTATCAGCGA 13479 36 100.0 30 .................................... TTCTGCAAAAGATTTATCGTTAAACTCTGC 13413 36 100.0 30 .................................... ATGTTTTTAAGAAATGTTCGTCTATTAAGC 13347 36 97.2 30 ..............T..................... ATAAAATAGCGGAACATAACAAGATGATAT 13281 36 97.2 30 ..............T..................... TAAAGGAGTAATGATATAGTCTGAACTCTA 13215 36 97.2 30 ..............T..................... CAAGGACAAAAAACTTACTTTGGAATGGAC 13149 36 97.2 30 ..............T..................... TTCCGTTGCCAATTGTTAACAAGTAGTTGT 13083 36 100.0 30 .................................... AAATGCGAATAGCTTTTCCACTATCTGATA 13017 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.3 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AGAGTTAACTAATTTTCATGCTATCACAAAGTTTTAGAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTTAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGGACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAAGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATGAATCTCACCTATTAATATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //