Array 1 366119-367304 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABK01000014.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3254_R1 NODE_1_length_493472_cov_0.906079_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 366119 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 366180 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 366241 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 366302 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 366363 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 366424 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 366485 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 366546 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 366607 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 366668 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 366729 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 366790 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 366851 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 366912 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 366973 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 367034 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 367095 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 367156 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 367217 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 367277 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 383974-385589 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABK01000014.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3254_R1 NODE_1_length_493472_cov_0.906079_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 383974 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 384035 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 384096 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 384157 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 384218 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 384279 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 384340 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 384401 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 384462 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 384523 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 384584 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 384645 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 384706 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 384767 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 384828 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 384889 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 384950 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 385011 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 385072 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 385133 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 385194 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 385255 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 385316 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 385377 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 385438 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 385499 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 385560 29 100.0 0 ............................. | A [385587] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //