Array 1 44789-45000 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTS01000019.1 Streptomyces melanogenes strain JCM 4398 sequence019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44789 29 100.0 32 ............................. TTCGGCGACGGCCAGTCGGTGACCTGCAACGG 44850 29 100.0 32 ............................. CCGTTCGCCAGGGCTCCTGCGGCGGCACGGAG 44911 29 96.6 32 ............................C GGACGATGGGGAACCCCACCCCCTGAGTGGCA 44972 29 82.8 0 GG.G.........G...T........... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 CTGATCCCCGCGCAGGCGGGGGTGAACCG # Left flank : TGGAGTGAGCGGCCCGGAGCATCCTGGAGGGATGGACGGAGCGCTGATAGTTGTCCACCGGCCGCGTGGTAGCGGCGGTCGGCGCGTCACCGTGCGCGGGCAGATCATCGGCCTCGCCCACTGCGACCGGGATCTTGTCGAGTTCCTGCGGCGGTCGGGCCTCGATGAGACGAGTGCCGAGGACATGGTCGCCGGGAACTCGGCGCTGATCGAATGGCGGGGCGGCCGGGCGCATCACTATGAGGCGGCATGACGAGAGTTCTCCTCCCGCGTTCAGACGACTCGGCGTGTGCTGCGAACGTCGCTCCGGCGTCCGTCAGGGCCTGTTGGAGCTGACCTGCGGCGTTACGAGCCTCGGGCGACTATGCACCTCATGGCGAGACGGTCAGTAAAATGCTGGAGTCTCGGTGCGGTCGGCAGTGAGCGGGGAGGCCATGATGACGCCTTGTGGGAAGTGTCAAGAACTTGCAAAGCCGCTTTAGCGTCGCAGCTCAGGAAGC # Right flank : GAGTCCCGGTGAGCAAGCGGGGGTGACTCAGTTCTGCTCCAGCCCTCTCTACCCGGGCGTTCGGTGGAGGAAGGTCTCGTAGGTGCCTTGGCGGTGGGGCTGGATGGCTTCGCTCGGTGGGGTACGCGATGGTACTGGCGGTGTCCGTCTGGGCCGGTCTGTGAGTCGGGCTTGTTGGCTGTGCCATCGGGCGCGTTCAGCATGGTGGTGTCGCCGTCGGCGGTGGGCGGTGCCGTGTACGCCCAGCCGCTTCGCGACGTCGGTCCAGCCTGCGGCGGGCTGTTCGCAGGAGGGGCCGCGCTGGCCGGTGCCGTCCAGGGCTGCGGGAGCCAGGTGCAGGAGTTCGCCTTCGCGTTGGATGAGGCCGAGGTGGGTGAGTGCGGTGAGTTGGCGGTAGGTGGTGGCGCGGGAGATGGAGGCGCTGGCTTGGAGGTCGGTCAGGGTCTGGCCGTCGTGTTCGGCGAGTGCTGCGAGGATGGCGAGTCCGCTGGAGCTGAGTC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATCCCCGCGCAGGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCAGGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30009-32166 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTS01000021.1 Streptomyces melanogenes strain JCM 4398 sequence021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 30009 28 89.3 33 .AC...........G............. CAAGTACCACTACCGGTTCGTGTCCCCCCGCGT 30070 28 96.4 33 ....................A....... CGGCTACAGCACCGGGGCCCCGACGAAGGAGAC 30131 28 92.9 33 ..............G..........A.. CGTTATGGCTTCCCAGACCCGGAGCCCCTGGTC 30192 28 92.9 33 ..............G..A.......... CAGGCGTTCGGCTGCGTGGATCTCTTCAAGGAT 30253 28 96.4 33 ....................A....... CAGCACCCCGGCCACCACCGACCACTGGGTCCG 30314 28 89.3 33 ...........T..G.....A....... CTCCGGCGAGGGATCTGCCCGCCCCGTCCGCAT 30375 28 100.0 33 ............................ TCACGTCTCCCTTTGAGCCGATCACGCTGGAGG 30436 28 100.0 33 ............................ TTCCAACGCGATCACCGCCACCGGCGACGTCGA 30497 28 100.0 33 ............................ TGTGTCCGGGACCCGGCCGGACAGCGCCCACAT 30558 28 100.0 33 ............................ CTCGCCTTCCTCGCCGTAGGCGTAGGTCAAGAT 30619 28 100.0 33 ............................ TATCTGGAAGTCCACGGTGAAGGTCTGCGATCA 30680 28 100.0 33 ............................ TGCCGTCCCCGAGTCGGGCCGGTTCCTGGGGAT 30741 28 96.4 33 ..........T................. TGGACCGAAGGATGGCGTTCTGATGGCGTTCCC 30802 28 100.0 33 ............................ GGGGTTGTCGCCGATCGGCCCCTGTGCGGAGGC 30863 28 96.4 31 G........................... CGCCGGGGCCGGGCCGCCGGTGAGTACGACC 30922 26 92.9 31 ................--.......... CATTGACAAAGGGTGGCGCTCCGCCGGGGGG 30979 28 92.9 33 G.............G............. CCGCTGGCGGCGGCCGCCGGTCCCGAAGCTGCT 31040 28 89.3 34 A.............G..T.......... CGCCGTGCACCACCGGAATGAGCAGCACGGTGGT 31102 28 89.3 33 ...........T..G..T.......... CCGTTGATGTCGGTCATGGTGAACCTCCTCGGC 31163 28 92.9 33 .................T..A....... CTCGCTGTGGGCCGTGGCGGCCGCTGCCCGGAC 31224 28 96.4 33 .............T.............. CGGACAACTTCTGGCCGTCGTCGCGCGCGTGAG 31285 28 92.9 33 ....................A.....A. CACCGAGGTTTCGCCGCCCCGGGTGGTCGTGGT 31346 28 100.0 33 ............................ CTGGTTGGCCAGCGCGATGGTGTGCTCGGTCTG 31407 28 85.7 33 ..............G.....A....AA. CGGCCAGTCCTCGCTCGCCAAGGCGCTGCAGGT 31468 28 96.4 33 ....................A....... CGCACACTGCGCCACTGGCGCCGCGCACGACCA 31529 28 96.4 33 ....................A....... CGGACCGCGTCCTTGGCTCGAACGCGGGCGAGC 31590 28 96.4 33 ....................A....... CTGTCCCTGAGTGAGCCGAAGCCCCTGGGCGAG 31651 28 96.4 33 ....................A....... CGGATGGCAGACGGATCATCAGAGCACGGCTCC 31712 28 96.4 33 ....................A....... CTCCGGCGAGGGATCTGCCCGCCCCGTCCGCAT 31773 28 100.0 33 ............................ CTTGACGGCCCGTTGCTCCTGGTCGGCGTAGGC 31834 28 85.7 33 A....A........G...A......... CTCGCAGGTGAAGGTGTGGGCGCCGACCACGAT 31895 28 100.0 33 ............................ CGCATACAGGGTGGGGAACGCGGACTTCTGCAC 31956 28 100.0 33 ............................ TAAGTACGGGCTGAGTTCTCCCTGGCACAGGAA 32017 28 100.0 33 ............................ TGTGGTGAGAGCGATCGTCTGCATCCCGGCCGC 32078 28 100.0 33 ............................ TGGGATGCTGCGGGCCAAGAGCGGCCGGGTCAT 32139 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 36 28 95.8 33 CGTCGGACACCCGCAGGCGCGGGCTGGA # Left flank : CCGACAGCCCGTACCCGAAACGGGCCAGCAGAGACGGGACCGTCAGATGCGAAACCCTCTCATGCCGAATCGCTCCCTCATGCATCCACCCTGCCGGAGCCGCGAAAGCAGAACTCTCAAGAAACTCAGGACACGGCCCTGAAACCTGGCCCTGGAACGACGGGCAGCACTTGCCGATATCGTGCAACCCCGCCCACAACGCCACCATCCCGCGCGCAGCCGAAACCTCAACGCCGAAGGCATCAGCAATCCGATGGCGCTGCCGCCCCGTCAGAAGGGCGTCCCACAACTCCCCTGCAAAAGCAGCAGTGTCCAAGAGGTGACACGCCAACGGATACGGAAATCGAAGACCACCGGCTTTCCCCCAGACGAGCGAAATAACCTTGCCGCGCATCGAACCTCCTTTGGCGAAACAGAAATAGAGAACAGACAGACTTGCCGCACCGCCCGCGACAACCTGCACAGGAACGAAGCAGAGGATCGACGAGCAGGTCACGAAA # Right flank : ATGCTTCGTGACCTGGCAGTTCTGGGTGGCTTTACTGTTTTGTTATCAAGGTGCGGTCGTCTGGGCGAGGGAAGTCAGGCGCGGGTGAGGGGGGCGATGGACAGGAGTCCTGCGCCGTATGCCTTGCTGCGGCCGATGCCGTTGGTGATGGCGTCGGTGAGGGCTTGGGGGTTGTGGATGGTGGCGGTGCCTTCGAAGCGGGTCAGCTTCCTGCCGAAGCGGATCGTCTTGTCGGGTTCTTGTGGGTCGTCCTTTCTGACGGTGATGGCGAGTTGGGGGGCGAGGCGGGTGGTGTCGGGGTTGGGTGTGAGTCCGGCGTCTTCGGCTTGGCGGTGCCACCAGGCGACGGCTTCTTCGCCGTTGATGTGGACGCGGCGGCCGCGTTGGGGTTGTCCGTTGCTGTCGCACTGCGAGATGGTGCGGGTGGCTACGGCGTCGATGCGGTAGCGGATGGCGCCGCCTTCCTTGCACCAGGTGAGCAGGGGGGTCAGGTCGCGTTC # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGGACACCCGCAGGCGCGGGCTGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 27769-24012 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTS01000024.1 Streptomyces melanogenes strain JCM 4398 sequence024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 27768 28 100.0 33 ............................ CGCGAGTCCGCCGAACACGGCGACGCTGCCCAC 27707 28 100.0 33 ............................ CGAAGGTGCACAGGTGCAATATCCCGAGGACAG 27646 28 100.0 33 ............................ CTTGCAGGCGTCCTTGGTCCGGATTGCTGCGGG 27585 28 100.0 33 ............................ GCGTTTCCGGCCGGAGATTTGGTCCGCCAAGCT 27524 28 100.0 33 ............................ GGCCGAGCGGGACCGCAGGCGCGCGGCGGAGAG 27463 28 100.0 33 ............................ CCCGGGAGTCGACCATGACGGGCGACAGAGAAA 27402 28 100.0 33 ............................ CAGCTTCGGCTCCACCAACCTGTACGACGCGAC 27341 28 100.0 33 ............................ GTGGGGCGAGGAGCAGGAGGCGGCGATCAGGTC 27280 28 100.0 33 ............................ CGTATCCGTGGATGCGATCTTCACGCACAACGA 27219 28 100.0 33 ............................ GACGGCGGCCGGTGAAGGCAAGATGACGATGGA 27158 28 100.0 33 ............................ CCCGACGGGAGTACGCACGCGTTCACGATGGAC 27097 28 100.0 33 ............................ GTGTGGATCGCCCCCGTCGCACCGAAAATCGGG 27036 28 100.0 33 ............................ CTCGGCGACGCAAACTCCGCTGTGGCCAAAAAG 26975 28 100.0 33 ............................ GGCCAAGATCCGCCGCAAGCTCAGCTCGTCGGA 26914 28 100.0 33 ............................ TACGGAGTCCAGCCAGTTCCCTACGTCGGCGTT 26853 28 100.0 33 ............................ CTGCGGTCCGGGACCGGGACCGGTTTGCCGGTG 26792 28 100.0 33 ............................ CCTGGAACAGCTCCAGCGGGCCGTACCGCTGTC 26731 28 100.0 33 ............................ CCGCGGATTGCTCGACGTCCCCGGCTGGCAGTC 26670 28 100.0 33 ............................ GTTGGGAGGGGTTCCGCCAAAAAGAGAACGCAA 26609 28 100.0 33 ............................ CCAGGCCATGGACAAGGCCAGCGTCGACGCAGG 26548 28 100.0 33 ............................ CCAGATCCTCAAGGCTGGTCTGCCGTTCGTCCG 26487 28 100.0 33 ............................ CTCGTTCTCCAGCGTGTCCAGCACCCGGCCGGG 26426 28 100.0 33 ............................ CGTCGCCCCGGAGACGGTCGGCTCGCTCAATGC 26365 28 100.0 33 ............................ GCGCGGTGCGCGGTCGGGGGGTTCGCCGTGACC 26304 28 100.0 33 ............................ ATGCAGGGCCAGTTCGTCGGCGGCGTCGCTGGC 26243 28 100.0 33 ............................ TCCGCCGTCACCGTCGCCGTCCACGAGGACAGC 26182 28 100.0 33 ............................ GTTCACCATGTGCCCGAGCAGGTGGTACGGCGG 26121 28 100.0 33 ............................ CGAGACCAGGTCTCCCGAGACCACGCCGACCGG 26060 28 100.0 33 ............................ GCCGGGATGCCGGGGTTTTTCTGTCACCCGGTC 25999 28 100.0 33 ............................ CAGGGCAAGCGGACTCCGGTATCCGTGGTGGGC 25938 28 100.0 33 ............................ GGCGCAGATGGAGGCGGCCAGGGTGGCCGCCCA 25877 28 100.0 33 ............................ TCTCGGCAACGGCGCCCACACGGAGATCGTCGT 25816 28 100.0 33 ............................ GGCGCCACCCTGGCCAGCACCGAGTTCGACGGG 25755 28 100.0 33 ............................ CTGGCACACCTGCGAGGACGCGTTGGCAGGCAG 25694 28 100.0 33 ............................ GCCGTCGAAGACGTGCTGAACGTGCGGGAGGGT 25633 28 100.0 33 ............................ CTGCCGCTCGCACTTGAAACAGCCGGGCCCCTC 25572 28 96.4 33 .................A.......... GCCGGGGCGGTCTTCGCAGAGCGCGAGCGCGGC 25511 28 100.0 33 ............................ CCGGGGCCGCACCCGCGTCGAGCCGCGCTTCGG 25450 28 100.0 33 ............................ CCCCGATTTCACCGCGCAGGCGGTGGGCACGAC 25389 28 100.0 33 ............................ GCTCCGCAAGGTCCTCGCTGCCCGGCACGGGCA 25328 28 100.0 33 ............................ CCCCGATTTCACCGCGCAGGCGGTGGGCACGAC 25267 28 100.0 33 ............................ CGGCCGTAGCACCGTCATCCGCGTGCCTTCAGC 25206 28 100.0 33 ............................ TGCCATCGCAGTTCCGAGCGTGTGGGCGCTGGA 25145 28 100.0 33 ............................ CTGCACCCCGGCCAGTCCGTACACGGTGGCCGT 25084 28 100.0 33 ............................ GCTGGGGCCGATCGTCACCGTCGTCGTGGTCCT 25023 28 100.0 33 ............................ ACCAAGGGGGCGTGGTGGCTCGTGCTGCCCGTC 24962 28 96.4 33 .......................G.... CCTGCCCGGCGGGGACATCGTCCGCGCCCACCG 24901 28 96.4 33 .C.......................... CTCTCCGCCCGCGCCCGCGCCGACCTGGTCCGC 24840 28 100.0 33 ............................ GCTCGTTCGGTCGGCCTCCTCCATGAACAGGCG 24779 28 100.0 33 ............................ CTGCGGTCAGAACTGCGCCCGTTTCTGCGGTCC 24718 28 100.0 34 ............................ GTCGGGGGTCGGAACGGTGGTCGCCGGGCCGATC 24656 28 96.4 33 ..............T............. GTTCGCCGTCCTCTACCCCGATCCGGGGCGCGC 24595 28 100.0 33 ............................ CACCCCGGCGATCACCGTGCCCACCGTGCCGAA 24534 28 100.0 33 ............................ GTAGCTCTTCCCGCTGCCCGTCTTGCCCAGGAT 24473 28 96.4 33 ..............T............. GCGCAGGGCGCCGCTCACCTCCAGGCCGCCGAC 24412 28 96.4 33 .................A.......... GACTTCTACCGCTTCGCCCTGGAGCACGGCCTT 24351 28 100.0 33 ............................ CTCCAGGCGGAGCGGGGTGACCGGGGTGCCGGG 24290 28 96.4 33 ..................A......... GGCGAATAAGAGCGAGACACCCGTGCCTGACCA C [24281] 24228 28 100.0 33 ............................ CAAGGCCGGACGCGACGCCCTCAGCGCTGGCAC 24167 28 96.4 44 ..............T............. GCTCGCGGATGAGACCTTCGCGGGTCATGCGACCACCGCCGCGT 24095 28 82.1 23 C...............T.....A..GA. GCTCGAACGCCCAGCCCCGGTCG TCCC [24071] Deletion [24045] 24039 28 85.7 0 ........T...T.T...A......... | ========== ====== ====== ====== ============================ ============================================ ================== 62 28 99.0 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : GGAAGAAGACCTAGGAGGGCTCTGGGACGACAAGGACGGCGTCGTCAGCAGCGGCCGCAACTGGGGTGACGCCCCCTTTAACGCGGACAGCCACCTCGACGTCCTGCCGGACCCAGGCGAAAGCACCACATCGTGAGCGGCGCGACGACGGTCGTCGTCCTCATCGCCGCTCCCCCCGGCCTCCGTGGCCATCTGACCCGCTGGTTCACGGAAGCCGCCCCAGGGGTCTTCGTCGGCAGCCCCAACGCACGCATCCGCGACGGGCTCTGGAAGATCATGGCTGACCGCATCCGCGACGGCCAGGCAGTCATGATCGAACCCGCCAGGACCGAACAGGGCTGGACCGTCCGCACCGCTGGCCAGGACCGATGGACCCCTACCGACTTCGACGGACTCACGCTCATGTCCAGACCAAGAGCAGCAGTGGACAGCCACGGAAGGCCGCGCAACAAGTAAAGGAAAACGGCATGATCGCCTGACAACAGCCCAGGTCAGCAAGA # Right flank : TCGGGGTAGAGCGGATCGCCCGAGCACATGGAGTGACGTACGCACCGTTCCCTGCCGCTGTGCTCGACAAGTGACCGACGGCCGCCCCCTCCGTCCTCTCGCCCCCCGGTGGCGCCGCTGATGGTTGCGCAAACAGTGCGGTCCGCAGACCCTCGCAGCGCGCTACCCGCGCCGGGGCCATCCTCCTGCCCGCAACCGGTCTTCCTCGACTTCCAGCAAGGGCGGGCGAACTCTCCCCAACCGAGATACCGGGACTACTACCTCGTGAGGACCAACTGATGCTCGACCGGAAAGAAGCAAAGGCGCGGGCCGGGGCGTTCCTCGCCGAGCAGAGCCAGTCCTGGCCGTCCAGCAATGTGCGGATCATCTCGCAGGACTGCTTCGTCGAGGGAGAGAGGTTCATCGCACCGTACGACCGGATCGAGTTCCTCGATGACGGGGACGAGCATTCCCGGCTCGCGGGCAACCTGCCGATCTGCGTCGATCTCGCCACAGGAATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38195-38954 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTS01000024.1 Streptomyces melanogenes strain JCM 4398 sequence024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38195 28 82.1 33 CGG.GA...................... GGCCGCGGTCGCGGTGCGCGCCGCCGACCTGCG 38256 28 96.4 33 ..................C......... CCCTGCTCAGGTGCGGGGCGAGCGCGCGGTCAC 38317 28 100.0 33 ............................ CGTGCCCTGAGCGACGGTGAGGCGGTGCCAGGC 38378 28 100.0 33 ............................ GCCCCACCTCGCCGCAACGGCGAAGCGATTCCA 38439 28 100.0 33 ............................ GATCCGCGTCGACGTGGCCACTGCGCCGGTGGC 38500 28 100.0 33 ............................ CCGTCGTCAAGGCACGCACCGCCGGGTTCTGGG 38561 28 100.0 33 ............................ CAGGCGCCCGCCGCCCCGCAGGCGGCCAGCGTC 38622 28 100.0 33 ............................ CCCGGGCGTGGTGCCCGCGCCCGGCTACGCGGA 38683 28 100.0 33 ............................ GCGCGGGCGGGTCAGCCCACCGGCTGCTCCGCG 38744 28 100.0 33 ............................ CACGCGCCGGTGGCCGGCCGGTGGACGGTCCGG 38805 28 100.0 33 ............................ GTGCAGTGCTCGCACTGCGACTACGGGTGGGAG 38866 28 100.0 33 ............................ CCTGACCTCGGTCTCCGGCGAGGCGACCTTCTC 38927 28 96.4 0 ........T................... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.1 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : GGGGCGGCCTCCACATCGTCCATCGCCTGGAAGGCAGGACAGGCCTTTCCGCAGTCATGAATCCCGCAGATCCACATGAACCACACACGCCCGCGCCCGCCGCTGATCTCCTCCAGGCGGCGCCGCAACGCGGCCGACAAGTACCGCTCCCACATCACCTCGGCCACGGCGGCGGTGTCCAGCAAGTGCCCAAGCAGCAGATGGGACCGCCCCCCGTTCCGCGCGGCGGACTTCCCCCACAACCGCGACACTCTGGCGATAGCCTCGTCCGACAGGCCCATGACCCGCATCACGGCAACGATTGACCGCATGTCCTCCACTGGCACAGCCCCTTCCGTAGAGTGGACCCGCACCATAGACCCGCCCACTGACAACGGTCCTTGATCACATGCCCGACCAACGGTCCCCGCCAAAGGAAAACTAATCCCATCGCTGGCATCACCGCAGGTCGAGAAGTGTCGTCCCCGGTGATGCCAGCGATGGGATTAGTTTTCCTTTGG # Right flank : CGGGGTACGACGGCGCGCCGCTGACCGACGTCGGATCACGTCCAAGCATGGGCGAACGGCGTTGAGGACAGCAGGTGTTCAGGTGGCGAGCGGGCCGCTGACGCCGTTGAAGCGGATCAGGGGCACGAGCTCGCGGAGAGCGCCGTAGTGACTGGGGCGGCCCAGCACCAGTGTGTGGTCGGCCACGGGCCAGGTGCGTTCCACCCGGCAGACGGCCGTGGCCAGCGCGGCGTCCAGCAGGGGTACGCCGTCGATGAGGTGATGGGGGACGGTGGCGAATCGGTCTCCCGGCGCGGTGGCGAAGTGAGTGGCGAGCGTCGTCTGGTCGCCGGCGAGCACGTTGACTCCGAACGCGCCCCGCGCCCTGAGCGTCGCGAGGGTGCGGCTGTCGTCGGCCAGGGAGACCAGGAGCAGGGCGGGGCGGAGGGAGACCGAGGTGAACGCGGTCACGGTGCAGCCCACGGAGCGCCCGTGACGTCGGCTGGTGACCACGGTGATGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8690-9268 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTS01000044.1 Streptomyces melanogenes strain JCM 4398 sequence044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8690 29 100.0 32 ............................. GCCGCGAACGGCTCAGCCGCTTCCCCGAGACC 8751 29 100.0 32 ............................. AAACGCCGACGGACGTTGGGCCGTGCAGCGGG 8812 29 100.0 33 ............................. CAGTCCACCACGGTGGCCAAGCCCACCTACAGG 8874 29 100.0 32 ............................. GAATCTACGTCCTCGCCACCCCATACGACGAG 8935 29 100.0 32 ............................. ACCGATGCCATCGACCCGGCCGGCATCAGCAA 8996 29 89.7 32 G..G........................C CGTTCCCGTGTGGCGGGAACGGAGCCGCACTC 9057 29 89.7 32 G..G..........A.............. CGCGTCGGTGTCGACATCGACACGGCGACGGC 9118 29 93.1 32 G..G......................... CGGCAGGTATGACACGGTACGCGGGTGGTGAG 9179 29 89.7 32 G..G......G.................. GAGCCGTCGTTGTAGCGGGCGACACCAACTGG 9240 29 93.1 0 G..G......................... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.5 32 CTGCTCCCCGCGCAGGCGGGGGTGAACCG # Left flank : GCGCAGGACCGCCTTGATGTCCCGGTTGGCGTGTCCAGTGATGGTCATGGCGGCGATCGTGGTGCGCTGCCCGTAGACCCTGCCCAGGGTGATCGTCGCCGAGGCTGCGAGTCCCGTAGCGGATGGCCACGCCGTGGTGTGTGGTCGGTCGGTGATCTCCCCGTATTCGGGCGGGGGCTGCGCGTGCCGACGCCGGGCCGGAGGTCGCAGGTGCGGCAGTGGGCAGAGCGCCCAGTCGGCTGGCTAACTCGTGGTTGTGGCCGGTGCGTTGCCGGGACGCTACCCTGCGCTGAAGGCCTGAGACGGGCAACGGGCATGGCCTGCTGTGCGGCCGGAACGTTCCCGGCCAAGGGCGGCGGCACCATGACCGAAATCTGCGGGATCAGGAACGAAAGGGAACCGGCCCGTGCCAAGACGCGACGTCCTGCGGCCGCTGGCCCGTGCGTATCCAGGAGGGTCAAGAACTTGCAAACCTCCGTGAGAACCCCAGCTCACGAAGC # Right flank : GGAGCACCCGAACCCCGTGTACGCGTTCGCCGGTTGGCGGGGGAGGGTCTGTCGGCTGTGCGTTCGCCCGCCTTGAAGCTTTCCTCAGTTTCTGGTCTCTGAGGGGGTGGGTGAGGTGTGCGTGGGTTCCGGGTGCGCTGGTGCCGTTGGTGAGGGGGCTCTTCGGTGGCCGGGGTTGTGTGGGATGTGTTCTGAGGGCGTGGGATGTTCAAGTGCTGTGAGAGCCGCGCGTGTGGTGTGGGCTCGGGTGTCGGCTGCTTGCGTGAAGTGAACCGGTGATATCGGCGGGGGCGGCGGCTGCATTCGTCTGTTCCGGGCTGCCAGTCGGAGTTGTGTGTGCTGCCAGTGAGCACGTTCAGTGTGGTGGTGTCGTCGTCTGCGTTCACCTGTGCCGTAGACGCCCAGGCGTTGTGCGACGTCGGTCCAGGTGGTGGCCGGGTGTTCGCAGCGGGGGCCGGGCTGGCCGGTGCCGTTGAGGGCTGCGGGCGTGAGGTGGAGGA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCAGGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //