Array 1 28210-27034 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905360.1 Salinispora pacifica DSM 45544 Salpac3DRAFT_Scaffold2.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 28209 30 100.0 38 .............................. ACCGCCAGCAGCCGCAACAGCCCCTCCCCCGGCTCCAG 28141 30 100.0 37 .............................. TGCTCCAGGTGCACAAGGTGCGCCCGACCCCGGACCG 28074 30 100.0 37 .............................. CGTCAACCCTGATGGCACGGTGACCGCCTGGGGGCGT 28007 30 100.0 37 .............................. GAGATGGTGCGTCACCATCTGGTGATCCGGCTGCCGC 27940 30 100.0 37 .............................. GATGCCGAGTGGGGCAGATTGCTCGGGAGCACGCCGA 27873 30 100.0 37 .............................. CTGCGTGACCTGCCGTTCCGCCGTCTGGTCGGATCCC 27806 30 100.0 39 .............................. GAGGGTCCCGATGTTCGGAAAGCGTAGCGGCAGCCAGAC 27737 30 100.0 39 .............................. CGATAATCCGGTCCATAGCCGCAGTACGGACGAACGGGC 27668 30 100.0 40 .............................. GTCCAGCCGGTCAGCTCCCGATGCACCGTCACGATCCCGG 27598 30 100.0 35 .............................. ATGACCTGCGCCAGGCGCTGCACCTGGTCCGTGGT 27533 30 100.0 38 .............................. CCCAGGGGCAGCAGCAGCCGGCAGGGCCGCCGCAATAC 27465 30 100.0 40 .............................. TCGTCAACTACGGGCTGTTGGAACAGCTCAACTACGACCG 27395 30 100.0 35 .............................. GTGGCCTGCTCGACGGTGCCCCCGTCACGGACCCG 27330 30 100.0 37 .............................. ATGCTCGCCGGCGAGGCGATTACGTACGAGCTGGCCG 27263 30 100.0 34 .............................. AACGACTGCTCGACGCCATCACCGCCGGCCGCAT 27199 30 100.0 37 .............................. CCGCTGATGCCGTAGGCCGCCTGTATTCGTCGGGCGT 27132 30 100.0 39 .............................. CTGAGGAGTTGGATGAGGGCGAGCGGTGGGCACTGGCGT 27063 30 86.7 0 ......................G.A..CC. | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 99.3 37 GTCCTCATCGCCCCTACCAGGGATCGCAAC # Left flank : GGCTGCCGAACTCCACCACACCCCGACCACCGGCCGCATACCGGCCGCGCTGACGTCGCGCACCAGGAAACACCGGAGCACTGTGCGCGATCGGAGTCATGCCGTAGGGCCCTGAACCCTTTTCGTGTAGCCGCTCTCCGAGATCAGGATGCGCTACCGCAAGCAACTGGTACGCGATCCCCCGCCCGGGAGCCAGCACCATCGGCCACGGAATCTCCGACGCCCGCGTCACCACATGCACCCGCAACCGCACCAGCGCCTCCCTGGGCTGCAGCCAACAACTCGGCCACCCTAGACAGACCCACCGACAAGAAAAGTGATCTGTCACATGAGCGACGCTCTGCGCCAACGCCAGATCCAGCACCCGACGGGACCGAGACTTTGATCATCTAAGCCGATTGCAGCGATACCCCGGGGTAAGCTGCAGCACCGGAGGTTCACCGCAAATGAGCCAGCAACTCCCCCAACACGAGCCCTCTAACCAGGGACTTAAGTTTGGG # Right flank : AGTACGAACCATCTACCCGGCAGTCCTCACGATGCCCTCGCCTGGCGACGCCCAGGTATGGCTGTTGGCCGGCACCCGTGTCGGGTGCCGGCCAACAGTTTCTTTCCCCCTTGAGGGTTAGGTCTGGTGGTGGTGCCGGGGTCAGCTGGTCCAGTGCTCGGCGACCAGGTCGGCGGCCTGGGTTTCCCACTGGGCGTAGTGGAACGGGTACGCCGACACCTGCACCGTCTGCGCGGCCTCGGTCAGGGGCATGTCCTGCCAGCCCTCGACCTGCTTCAAACCGTTGAGGAAGGCGGTGGTGGAGTACTCGGGGTCGGTGATCTGCTCCACGGTGCCCCAGCCGGAGGACGGGCGCTGCTGGAACAGGCCCTGCGAGTCGTGGTCGTTGCGGTCACCCAGGTGTCCCAGGTTCTCCAGCTTCGACTCCTGCAGGCTGGTGCCGATCGCCACGACGGCGGCACGCTCGCCCATGCCGGCCTTCTTCGTGGCCTCGATGATGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACCAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.50,-4.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 36714-37826 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905360.1 Salinispora pacifica DSM 45544 Salpac3DRAFT_Scaffold2.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 36714 31 100.0 37 ............................... GAGATCAGCCAACCGGGAGAGGGACCTCTAGCCCGAG 36782 31 100.0 38 ............................... ACGACGGCGTTCCTCGCCACGCTGGTCACGCAGGACAG 36851 31 100.0 37 ............................... ATACATCACGGCGCTGTCCGCGCCAGTACCGTGGCGA 36919 31 100.0 36 ............................... CACAAACGAGCGTCCGGTGATCCGCTCAAACTCAGA 36986 31 100.0 34 ............................... GAGACGTGGCTGCGGGCGTTGCGGAACCTGCCGG 37051 31 100.0 37 ............................... GCGATGCCAGGGTCCTGCGCGAACATGACCTTGGTGT 37119 31 100.0 37 ............................... TCAAACCAGCGGACCAGGCGGCCACCGGCGAGCACGC 37187 31 100.0 36 ............................... AAGATTTGGCGGGCTGGGTCAGTTACCCAAGCGCGG 37254 31 100.0 37 ............................... GGTGCAGGAACGACCGGAAATCAGCTCGGGGCGGCGG 37322 31 100.0 36 ............................... CGGATCGGGTGGGCGTCGGTGATGCCGGCGATCCAT 37389 31 100.0 40 ............................... ATCAGTGGTGACGACCTGTACGCGCTCTTCCACCTGATCG 37460 31 100.0 39 ............................... CGGCCCACGCCAACCGAGACGGGCACGCGTGGCCGTCCG 37530 31 100.0 36 ............................... CTTGGGGAACCGCTGGTTGAGCTGGTCTCGGGCCTC 37597 31 100.0 34 ............................... TGGAATGCTGCTGCGAGGACGGCGATCAGCTCGT 37662 31 100.0 34 ............................... ACATGATCGTCGGAGCGGACGTGACCGGTGACGG 37727 31 100.0 38 ............................... GCGGGGAGCCGTGCGATGAGCAGGGCGACGGTCTGGGT 37796 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 17 31 100.0 37 GGTCCTCATCGCCCCTACCAGGGATCGCAAC # Left flank : CAGCACCGCAGCCTCGGCCGGAAGGTCGCCTACGACGAACTGCTGTACCTGGAGGCGCTGCGGCTGGCCCGCTACTGCCTGGAACGCGAGCCGTACAAGCCGTTCCGGATCTGGTGGTGACCTGTGTACGTGATCGTCGTCTACGACACCGCCGCGAACCGTAACCCCAGAATCCTGCGAACCTGCCGCCAGTACCTGCACCACGTCCAACGCAGCGTGTTCGAAGGCAACCTCAGCGACGCACAACTCCGCCGCTTCCGGAGCGCCGTCGACAAAGCGATCGACGCGTCGTACGACAGCGTACTCGTCTACACGTTCCTTCCCGGCACGACTGGTCAGCGGCAGGAGTGGGGGCGGTCTCAACCCAGCCCTTCAGATATCTTGTGATCTTGGCCGGTTCAGCGACATGCCGAGGTAGATTGCACTACCGGAGGTTCGCTGCAAATTGAGCACGGAACCGGCCAGTCAGAGGGCCCATGACCAGGGACTTAACGCTGGGG # Right flank : CCCGCCCAGGACGCCGGTGACACCGGTGCCGGGATCGCCGGTCCTCATCGCCCCTGGGGTGTTGGTAAGAACGACGACACCAGGGGCCAAATGGTTGATCTTCACGGGCCACCCGGGGCGATCGACGGTCGTTGAGCTGGTGTCCCGTTAGGGGAACCCTCAACGGACACCCGCCGGCAGTGCCGACGACACGCGTCCACCAGCGACGAAGACTGTCTCAGATAGGGTGTCCGGTGGTTTGTCCGGTGGTGGGGGGCTATCCGTTACGCTCCACCCGTGACCGCCGTGCTGATCGGATACGCCCGCTGCTCGACCGACAAGCAGGATCTAGAGGCCAACCGCCAGATCCTGCTCGACCTCGGGGTGCCGGCCGAACGGATCTACCTTGACCGGGCGTACTCCGGCACCAACCGCGCCCGGCCCGGCCTGGACCAGGCCCTCGCCGCCGTGCGGCCCGGTGACACGCTCGTTGTACCGAAGCTGGACCGGCTCGCCCGGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCGCCCCTACCAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1004880-1004606 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905359.1 Salinispora pacifica DSM 45544 Salpac3DRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1004879 30 96.7 31 .............................A GGTACGGCCGATCGTGGCACGCCGTCTGGAC 1004818 30 100.0 31 .............................. GAACGGGTGATGCCATCCCGACTCAGATCCG 1004757 30 93.3 31 ............................AC CACCACAACACCCCACCCGCCGAACTGGCGG 1004696 30 100.0 31 .............................. ACCGAGGCGTGACCTGGAGTGTGCCGGTCGT 1004635 30 86.7 0 ..........................TGTC | ========== ====== ====== ====== ============================== =============================== ================== 5 30 95.3 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Left flank : TACCGACATCCAACATCTACTCGACCCCGACAGCACACCTCAACAGCGGCAACCCGCCGCCGAAATCACCTCACTCTGGGATCCAGAGATGGGAGCCATGCCGTCCGGAGTCAACTACAGCTCAGACCCCTGGGACTAGCATGGCTTCCCTTGTCGTCCTGGCGACCACCGCCGTACCCGATCACTTAAGAGGCGCACTCAGCCGCTGGATGATCGAAGTGACACCCGGCATGTTCGTCGGAACGCTCTCAGCCAAAGTCCGCGACGAGCTATGGAACGCAGCAAGCAGCGTCGTCGGCGACGGCGCCGCCGTCCTTATCCACCCAGACGACACCGAGCAAGGCTTCTCCCTACGGACCGCAGGAGCACGCAGACGCCGCCCGGTCGACTTCGACGGCCTCACCCTAGTAGCCATGAGCCCCAATGAACACCACGACGACGCTTGCACCCCAGCAGAAACCATCTGGCCGGAAGGCTGGTAGAACCGCAGGTCAGTAAGT # Right flank : GGCGACGCGTGAAAAAAAATCGGGCTCTGGCACACATTTTGTGAGTCGCGCTCGTCGGTAGTTCGGGTTGGGTTGCCGGGATGGAGATCATTCCGGCGTTGCTGCCGCACCTGATGGGCTTGCGGTTGGAGGCGGTGGTGGTCCGGGCCGTCGGGGTCAGGATCACTGCGGCGACGCAGACGGTGCGGGCACGGTGTGGCGCCTGTGGCGTGTGGTCGACCACTGTGCATGGCCGCTATGTGCGGCGGCTGGCCGATGTCAGGTTGGGTGGTCATGAGGTGCTGGTCGCGTTGACGGTCCGCCGATTCACCTGCGCCAACACCGAATGCTGGCGGCGAACGTTCGTCGAGCAGGTGCCCGGGCTGACGCGGCGGCATGCCCGTCACACCGTCGTGGCCGCGGGCGACCTGGAAGCCGTCGCGGTGGCGCTGGGCGGTCGACCGGGCAGCCGGCTGGCGCATCGGTTAGCGGCATCGGTATCGCGCTCGACGTTGATCCGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1013855-1015101 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905359.1 Salinispora pacifica DSM 45544 Salpac3DRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1013855 30 96.7 31 .............................C CGACCTGGCCGAGCGTGTCCTGACGCTGCTC 1013916 30 100.0 31 .............................. GAGCCAAGGCCGACGACATCGACGCCGCGAT 1013977 30 96.7 31 .............................C CGCTCGGGCTCACTGGTTGCGGCAAATGGGC 1014038 30 100.0 31 .............................. ACCCGGATTGGGGCATGCTCGTGTGGCTGGC 1014099 30 96.7 31 .............................A CGAGTACCGGCGGGATGCCCGGCGTTAGTGG 1014160 30 96.7 31 .............................C CGACATCGGCGCGGCGGTTCATCCGCAGACA 1014221 30 96.7 30 .............................T CCTGCACACCGGTAGTGGTGAACGCCGATC 1014281 30 100.0 31 .............................. TGGGTTGGGGGACACCAGGGACAGGAGGGAC 1014342 30 96.7 31 .............................T GTTGCGCCGGGTTGGAGCCCTGGGCAACCAC 1014403 30 96.7 31 .............................C CTCGGTTGCTTTACGGAGAGTGGTGGAGGTG 1014464 30 96.7 31 .............................A GGGCGTGGCGCACTACGCGAACCTCGAAACC 1014525 30 100.0 31 .............................. AGTTTTTACAACGCCTGCGTTGTGTAAGAGA 1014586 30 100.0 30 .............................. GTTTCGGCGACACGAGCAGCCTTTGCGGCG 1014646 30 96.7 31 .............................T CGGACAGGGCCTCGTGCAGGCCGGCCCGGTT 1014707 30 96.7 31 .............................T TGGATGCTGCCCGCGACCTGGATGGCCTCCA 1014768 30 100.0 31 .............................. CTGCAATTGCGTGTCGGTACTTCGGGTATGG 1014829 30 100.0 31 .............................. CTGTCGACATCGCGGCCGGTGCACTTCATCG 1014890 30 93.3 31 .............G...............C GGCTCGATAGGATTTCCGCGCAAATCCTCCT 1014951 30 100.0 31 .............................. CGATTTGTGCGGCGGCGTGGTGGAGTGCGTC 1015012 30 100.0 31 .............................. ACTGTGGATCCGAGACGATCAGCGCGGCGGC 1015073 29 96.7 0 .................-............ | ========== ====== ====== ====== ============================== =============================== ================== 21 30 98.0 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Left flank : AAAGGAGCAAGAAGATCCGGCAAAGCCAACTGACCAGCGGTGTCATGCCTCAACGAGCCATCGCCTACAACATCCTCATACGAACCAGCACTCCGCAGCGCATCAAACGCGCTCCCATCCTTCTTCTGAAACCCCGGGGTTGCCTTGCCGACATCGTGTAATCCCGCCCAAAACATGATCAACGATTTAGCGTGACTGTCGTTGGTGGCCAGCCCCTCCGCGATGACCCTCCGTTGGTTCGGGGCCAGATAGCGATCCCACAAGGCACCAGCAACGGCCGCGGTATCAATCAGATGCCAGAGCAACGGATACGGTCTCAGGAGATGGTTAGACTTGCCCCAAATCCCAGCATCGACCCCGTCATGATCGACCCCCAATCCGACCCCCTCCATTCGTACCCGCTCGGCAAGGGCATCAGCATGCAACCACAGCCATACGACACCACGACTCGACCGACGCAAAACCGCTCCCACGGCTGATAGACGCGCAGGTCACGAAGT # Right flank : GCGGGCGGCGCGGGCGCGGCCGGCCGTCGCGCGACCGGGAAGACAACCTCTTCGAAGAAGAAATCGACCAATCCCCGGCCGCGCCGCACAGGTTAAAGATCAAGTTAGGAGTTGGCCGCCGTTGACCACCGTCACGCATTCCAACGGGGCCGCTGGCATCGCACCTAGAACGAGCAAGCTACTCGTGGCATTCGAGTACCAGCTTCCAGCAGCCAGGGCTGTTGCGTAGTCGGTTGAGGGGTGCTGACCTGGAGCTTGGGGGCCCTGTTGCCCGTGGGGTCTATGTAGGACGGGTGCGGCCCGTTGGTGATCATGGTGTTTGCGAAGACAACCGTGATCGAGAATAAGACCGCACCCGCTGATGTCAGCATCACTGACCGAGATCGTGCTGCCGCAGTGACCCCCGGGCATGCCGTGCCTGACCACGGTCACCGACGGTGATCGACTGAGCCGGTTCGTCGCGTTGGAAGCGGTGGACGACCCGCGGGATCCGCGGGGTC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //