Array 1 201495-203353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHSH010000003.1 Escherichia coli strain O179:H51 / fimH32 / 155 / B1 isolate T7-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201495 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 201556 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 201617 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201678 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201739 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201800 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201861 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201922 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201983 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 202044 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 202105 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 202166 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 202227 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 202288 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 202349 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 202410 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 202471 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 202532 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 202593 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 202654 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 202715 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 202776 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 202837 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 202898 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 202959 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 203020 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 203081 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 203142 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 203203 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 203264 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 203325 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218854-219554 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHSH010000003.1 Escherichia coli strain O179:H51 / fimH32 / 155 / B1 isolate T7-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218854 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 218915 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 218976 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 219037 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 219098 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 219159 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 219220 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 219281 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 219342 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 219404 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 219465 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 219526 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //