Array 1 22625-24178 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCP01000005.1 Neisseria meningitidis strain M40102 M40102_S16_cleaned_ctg_8188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22625 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 22691 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 22757 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 22823 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 22889 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 22955 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 23021 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 23087 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 23153 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 23219 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 23285 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 23351 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 23417 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 23483 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 23549 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 23615 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 23681 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 23747 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 23813 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 23879 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 23945 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 24011 36 100.0 30 .................................... CGGCAATGCGGCGGCTGTGTTGGTTGGCGA 24077 36 100.0 30 .................................... CCGCCACCGTCTTACTGTTCGCCGGCTTGT 24143 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //