Array 1 371254-372148 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MLQW01000003.1 Listeria monocytogenes strain LIST-LEB NODE_3_length_377535_cov_41.3766_ID_746, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    371254	    36	 100.0	    30	....................................	TAATCGAAAACGGAAAATCGAAATTGGTCC	
    371320	    36	 100.0	    30	....................................	GTGATAGTTCTGTTTAGATCTACACTTTTT	
    371386	    36	 100.0	    30	....................................	ACGTTCTTCCGCAGAGAGTTCAACGTAACT	
    371452	    36	 100.0	    30	....................................	TTAGTATGTCGTTTCGTTTCTGGAAAACCA	
    371518	    36	 100.0	    30	....................................	AATGAAATGGATTTAAAGACTATCTATGAC	
    371584	    36	 100.0	    30	....................................	CATATTATTCTCCCTCCATTAATCCGCGCG	
    371650	    36	 100.0	    30	....................................	ACCCCTCTTGAAATTGAGACGAACGGAGGG	
    371716	    36	  97.2	    30	...................G................	AACAAAATCATCATTACCTGTGGAGCTGTG	
    371782	    36	 100.0	    30	....................................	AGAATTGTTTACATATTCGTCATCCCAGTA	
    371848	    36	 100.0	    30	....................................	TCTGTTTGCAGGCATTGGCGGATTTCGTTT	
    371914	    36	 100.0	    30	....................................	TAAAAGTAATGAATTATTCAGAACCAAGAA	
    371980	    36	 100.0	    30	....................................	TTTTTTGATCTATTAGTAAACTGTTCGAAT	
    372046	    36	 100.0	    28	....................................	TAATATTCTCCCCCCATCGCTAACAGGG  	
    372110	    36	  86.1	     0	.............A.....C.....T.A.......G	|                             	A,A,C [372135,372141,372144]
==========	======	======	======	====================================	==============================	==================
        14	    36	  98.8	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                              	       

# Left flank :   GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG
# Right flank :  GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAATTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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