Array 1 880693-882797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031606.1 Pseudomonas sp. phDV1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 880693 29 100.0 33 ............................. GCCGTATGCGTGACTTCCTCGACCTGTGCGTCC 880755 29 100.0 32 ............................. ACGCGATTCTTTAGCGCCCCAATAGGCAGTCG 880816 29 100.0 32 ............................. GATGCCAATGCCAACAGTTGGATAACCCTTCA 880877 29 100.0 32 ............................. CAATCAGCACCTGGAAGGGAGCGGCTGCCGTT 880938 29 100.0 32 ............................. TCCGGTGCCCGGCGTGCGGGACACGCTGTCGA 880999 29 100.0 32 ............................. GTAGTCGCACGATCAACGAAGCTAGGAACGTC 881060 29 100.0 32 ............................. CCTGGCGCTTTGCCGGGTTAAGGCTGATGCCG 881121 29 96.6 32 ............................T CCAGACCAGCCAGAGTCAACACCTCCTGACTC 881182 29 100.0 32 ............................. TCAGGCTCTTTCATCAGGGCGCCTAGAACGCC 881243 29 100.0 32 ............................. ATTCAGCGGATAACACCCCTATACATATCGCT 881304 29 100.0 32 ............................. GCATTGCCCTTCGCTGCTGCGAGGCTTTGCGT 881365 29 96.6 32 ............................T TGTACGAAATAGGGCTAATCGATTACCGGTTC 881426 29 100.0 32 ............................. ACTGGCGCAAAACCAGCTTTGACGGCGCTCAC 881487 29 100.0 32 ............................. CTGCCATACATCGCCCAGTTTAGTGACAGGCT 881548 29 100.0 32 ............................. CCATCGAATTGATTTGCCCGATGGTAACAATT 881609 29 100.0 32 ............................. GGTCACGCATTGTCGTCCTCCGGGTGGTAGTT 881670 29 100.0 32 ............................. ATTGCCGACCATTTCAACGATGAAACAAAGAT 881731 29 96.6 32 ............................A GCATCAGCGCGGCCAGGACGATCACTGTCCAA 881792 29 100.0 32 ............................. TACGTGGCCGACCTGGCATATCAGGCAGGGAT 881853 29 100.0 32 ............................. CTAGTAACCAGCTCAGACGCTTGTTCGTGCGG 881914 29 100.0 32 ............................. TCCGGCTCAGCCTTGTTCAGCGCGCGCTTGCC 881975 29 100.0 33 ............................. GTGAACTGCTCCAGGCTGGCATCAACACCGGTC 882037 29 100.0 32 ............................. AGTGCGCATTGGCTTGGGCGTGAGTGTGGAAA 882098 29 100.0 32 ............................. TTGCTGAAATTCGCGCATCAGGCAGCCTCCAC 882159 29 100.0 32 ............................. AATGAAGTGCCGCCAACGCGACAGGCGCACGT 882220 29 100.0 32 ............................. TAGCGGCTCAGGTGTGTCTGCTCAGCGGTAAT 882281 29 100.0 32 ............................. CCGGCCACGTTCCAGATAGCAATGCCCAGGAC 882342 29 100.0 32 ............................. TTGGGGGACAGCTTGACGACACCCATCGAAAC 882403 29 100.0 32 ............................. TCGGTGAACTTGGCGAGATGCTGGTCAAAGAA 882464 29 100.0 32 ............................. CGTTGTAACTAATCCATCAGGCCCGGTTACAA 882525 29 100.0 32 ............................. TTGATAGACGTTCATTTTCGCAACTTGTGCAA 882586 29 100.0 32 ............................. CAGATTGATGCGCGGGAGGCGCTGGCAAAGGT 882647 29 100.0 32 ............................. CGCATGGAGACGTTGGTTTTGCCGAACTGGAA 882708 29 100.0 32 ............................. GGCGTAGGCGAGATCCTGATTCGCAAGAACAG 882769 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAGGCGCCGGTCAACTCGATCTGGGAGGGTTCAGGCAACGTGCAATGCCTGGACGTGCTGCGCGCTATGTCCAAGGAACCCGGTGTGCTCGATGCGCTGTTCGCCGAGCTGGGTGATGGCCACGGCGATACCCGCCTCAAGGCGCACATCCAGCGGCTCAAGGCAGATTTCGCTGACACAGCCGATATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : CGCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCGCGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCGTATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGCCGTCTTTGGGCCAAGAGTGGCGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGACTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCTGGGCGGCAGGCTGATGAGGCGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 893909-898027 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031606.1 Pseudomonas sp. phDV1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 893909 29 100.0 32 ............................. CCACTGGATGATTATTTCCCGGCTTGCATCAA 893970 29 100.0 32 ............................. CCTCGGAACTTGCGGTTATACCGGTCTTCCAG 894031 29 100.0 32 ............................. TTGCCGTGCTCGGTTGCCAGGGACTGGGCGGC 894092 29 100.0 32 ............................. ACTTCGGCCAGGTGCCTGGCGATGGCGACGAC 894153 29 100.0 32 ............................. TCACCGCCGCGGGTAAGGACGGGGCCACGGTG 894214 29 96.6 32 ............................T TCACCGATCACCTTCTGTTGTTGGAGGTCCAG 894275 29 100.0 32 ............................. CAGGGCGTTGTTGGCCTTCAAACCCGCAGGCC 894336 29 100.0 32 ............................. GGCGGCGTGGGCTTGCTGTACGGCCAGCAGGC 894397 29 100.0 32 ............................. TCAGTAGTGTTCACGGCGCCTCCTTGGTACAG 894458 29 100.0 32 ............................. CCATGACGCGCTGCAGATGGGGCGACTGTGCG 894519 29 100.0 32 ............................. TCTTGCCAAGGCCAGGTGGGGCATACAGGCAC 894580 29 100.0 33 ............................. AATAGCAGCCGAGAGAGCGCAAGAGTGAAACGA 894642 29 100.0 32 ............................. TTACCCATGAAGGTCTACGTGATTGCGTTCGT 894703 29 100.0 32 ............................. CAAACAACCACCCTCCCGCTGGAGCAAAAGCG 894764 29 96.6 32 ............................T ACGTTGCTCGCCAGGTGCCTCGCATAGCCGAC 894825 29 100.0 33 ............................. GTTCGGGTCTCGACTGGAAACGCAGTAAAGCCG 894887 29 100.0 32 ............................. CTGGTAGATCAGGGTGGCGGCGCTGGCCGGCT 894948 29 100.0 32 ............................. CTCGACATGAACAGCATGGCTCGCTTGTTCTG 895009 29 100.0 32 ............................. TCAACGAGAAGGAATCCGAACTGGGCCGCGAA 895070 29 100.0 32 ............................. AATACGGCAGCTTGCGGGAGCAGGGTTTGCCG 895131 29 100.0 32 ............................. CCTACAAGGTCGCCATGACCAAAAAACTGGCA 895192 29 100.0 32 ............................. GCGCGTAGCCTTCAGCATAACTCCATGAAACC 895253 29 100.0 32 ............................. GATGAGAGCAAATAAAAAACGAGCGCCAGAAA 895314 29 100.0 32 ............................. TGACCATGGACGGCGCGAAACCTTCCGCATAG 895375 29 100.0 32 ............................. AACATACTGCCGCTGAGCACGGTAGTGTGGAT 895436 29 100.0 33 ............................. ATAGATCAGAGTCACGCAAGGCTTTACGTTGAT 895498 29 100.0 32 ............................. CAATTGGCATATTCACTCCCCAATGGTAGTAC 895559 29 100.0 32 ............................. TTCTCAATGGAACTTGCAGAAACCACATTAAA 895620 29 100.0 32 ............................. CCAACGGCTCTGGCTGGGATCTGATGAGCAAT 895681 29 100.0 32 ............................. CCCACTGCAGCAGTCAGGCAGGCCAGCACGCT 895742 29 100.0 32 ............................. GCCGAGCAGCGCCAATTCCTTGGCACGCTCAA 895803 29 100.0 32 ............................. GCAGCTAATGGCCCGCCATGAGGTGCGCATGA 895864 29 100.0 32 ............................. ACTCTGCTTCCGGCCAGGGCGGCGACCTATGC 895925 29 100.0 32 ............................. TTCACCCGATGATCTCGAAGGAGGAAGCCGAG 895986 29 100.0 32 ............................. CTCTTCCGAGCGCTGTTGGCTGGCATTGAGTG 896047 29 100.0 32 ............................. CCGCCTAACCATGAGGAATGCCCCCATGTGCA 896108 29 100.0 32 ............................. GCCGAGGCGCATGGTTGGCCATCAGTTACCGC 896169 29 100.0 32 ............................. GCCACGCTACAAGCCAACCTGAGCCAGGTGCA 896230 29 100.0 32 ............................. TTATCACGTTCGTGTTTTTGTGTCGCCATGAG 896291 29 100.0 32 ............................. CTGTATCCGCAATTCGCGTTATGGATAGTTAG 896352 29 100.0 32 ............................. AAAAACCTCTTCACCGTCGAAAGGCGAAGCGG 896413 29 100.0 32 ............................. CGAAACGGTGGCATCGTCAAGGAAGGGGATGA 896474 29 100.0 32 ............................. CCGTCACGATCCTGGCTGACCGCCTCGATGCC 896535 29 100.0 32 ............................. TACCAGGGTGGCGGGACGGAGACAGACCTAAA 896596 29 100.0 32 ............................. CGCCGTAGCGAATGGCTGACCTGACAAGAATC 896657 29 100.0 32 ............................. AGGTCATCCGCTTCGACGAGTTCAGGCTCCCC 896718 29 100.0 32 ............................. CCTGCTGCGGCACCCCTGCACGGAATGCCAGG 896779 29 100.0 32 ............................. GCTTCATCGGGCGTGCCAGGGTATTCCTGCCA 896840 29 100.0 32 ............................. GCCGGCAGTGCGGCGGCGTTCTTGCCGTCCTC 896901 29 100.0 32 ............................. CATCACACCAATGTAGTGGCCGCGGTCTTCAA 896962 29 100.0 32 ............................. GCCGACCCCTTCACTGTCAACCCGCTCTTCGC 897023 29 100.0 32 ............................. CTCGACGAGCTCAGCGAAGGCCTGATCGCGTT 897084 29 100.0 32 ............................. ACGGGCGCCGATGCCGGAACTGCGGACATAGC 897145 29 100.0 32 ............................. GCACTCCAGAGTGGCTGAAACTTCGCCTGGGA 897206 29 100.0 32 ............................. CAATGCGTTAACTGCCCTGGTGCGACTGATCA 897267 29 96.6 32 ............................C GCCGAATTGCCAAGGGCATCCACCGCGAGGTA 897328 29 100.0 32 ............................. GTATCATTTCGGCATATAACCCAGGTGCGGGG 897389 29 100.0 32 ............................. AAGTGCAGCGCCACTCACGCTCGTGTATCGGC 897450 29 100.0 32 ............................. CCCCAAGCCGACCCCGTCGAACAGGCGCGCGC 897511 29 100.0 32 ............................. TAGAGATTGGCTGTTTGGGAGTTGAGGCTGAG 897572 29 100.0 32 ............................. GTGCCGGCCGCCAGCTCAAGCTTGGCGCCTGT 897633 29 100.0 32 ............................. CTGACGCAGGAACTCGGGGTGCTTCAGATACG 897694 29 100.0 32 ............................. GTATTCCGTGGGGTGTTCATCACCCTGGCGGA 897755 29 100.0 32 ............................. CCGGGGTTTTTCTTTGTGGGCCAGCCGGGCGG 897816 29 100.0 32 ............................. TCGGGCCTGCAGGAGTAGACGCAGGTGGAGCA 897877 29 96.6 32 ....A........................ GGCGACGTTCCCACCATAGGCCATGGCTCGAC 897938 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTG 897999 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================= ================== 68 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAACGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTTTGGGGACAATTGGTTACGCTAAGA # Right flank : TGGAGGGGGGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4525753-4526142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031606.1 Pseudomonas sp. phDV1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4525753 28 100.0 32 ............................ AGTCGGGGCTGCGTAGGCGGCGGGGTCGGTGG 4525813 28 100.0 32 ............................ AGTTCCAACCAGGCTTCGACGAGCCTACGACA 4525873 28 100.0 32 ............................ ACGTCCCACGCTTTCATCACCAGCTGGGTTTT 4525933 28 96.4 31 ............G............... TTCATGTGCGCGGCGCGTGGCTTGATCTTCT T [4525935] 4525993 28 96.4 33 ............G............... GATCACGGCCAAACGCCCGTCGGCCACCATCAA T [4525995] 4526055 28 85.7 32 .T.........TG............C.. TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 4526115 28 75.0 0 .T.........T.........C.GCC.C | ========== ====== ====== ====== ============================ ================================= ================== 7 28 93.4 32 CCTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGTGCCTA # Right flank : CTTGGCAACCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTCACCGATGCCGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : CCTCACTGCCGAGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4538156-4541607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031606.1 Pseudomonas sp. phDV1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4538156 28 100.0 32 ............................ ATGTGCTAATTATAGTTACTTAACGATAAATA 4538216 28 100.0 32 ............................ ATCGTCAATAATTTCTACCATATCCCCCTCAC 4538276 28 100.0 32 ............................ ATTCGTAATCCCCCCACTCTCCCGCGCTCACT 4538336 28 100.0 32 ............................ TGTGATCGACACCAACGATAAAACTACACAGG 4538396 28 100.0 32 ............................ AGTTACTGCCCTCGGCTGTGTCGATGAACTTC 4538456 28 100.0 32 ............................ AATCCGACATATCAGGCTGCCCTGCCGACTCC 4538516 28 100.0 32 ............................ AGGTTAAGATTCGCCGGATCATCATCGAGGCG 4538576 28 100.0 32 ............................ TACATGGGCGACTCGCTGGAAAATATGAAGAC 4538636 28 100.0 32 ............................ TACCATGTCGCGGCGCCAGTTGTTGTAAGTGC 4538696 28 100.0 32 ............................ TGGAAAGGATCGCACACTAGACCAGAACGCTA 4538756 28 100.0 32 ............................ ATCAAATCCCGCGAACATGGCGACATCACCTT 4538816 28 100.0 32 ............................ AGCCACGCGGCCGGTCGCTTTGTCGCGGCGGA 4538876 28 100.0 32 ............................ TGCGCGACAACCAGCAGGCCACCGAAGGCTTG 4538936 28 100.0 32 ............................ AGCCCGCCCTCGCTCATTTGCGCGACCAGCTC 4538996 28 100.0 32 ............................ TGGCCACGATGCCTTGCGCGCGCGTGGGGAGC 4539056 28 100.0 32 ............................ ATGGTGCGCTACGGCCTGATGCTATTGGCTAC 4539116 28 100.0 32 ............................ TGGGAGGAAGTCGGCAACACCGTCACCGACAC 4539176 28 100.0 32 ............................ AGTCACGTCAAAGTCATTCGTAAGGAAGTACC 4539236 28 100.0 32 ............................ TCGGATTAAAGCCGGTAATGTTGTGGTAATAA 4539296 28 100.0 33 ............................ AGGACGAGGCCGCCGATGGTGGCGCCGTCTTCT 4539357 28 100.0 32 ............................ CTCCTCACCTGGTAGGCCGTGGTATTCGCATA 4539417 28 100.0 32 ............................ TGGTAGGCCGTGGTATTCGCATAGACCATCAC 4539477 28 100.0 33 ............................ GGATAATGCTATAAGCTCCGGGGTCGATTTAAT 4539538 28 100.0 32 ............................ TGATCAACAACCTGCTGTTCTGTAGAAGGATC 4539598 28 100.0 32 ............................ AAATCCCGTGCGCTTATACGCGAACGCCCCCG 4539658 28 100.0 32 ............................ ACCGCAAAACGGGCATGGCAGCAGCTCCGCAT 4539718 28 100.0 32 ............................ CGTCGAACCATAAGCCCCATCGCCGCGCATAG 4539778 28 100.0 32 ............................ AAGCTCAAGCCACTGCACTACTTCCTCAAGCG 4539838 28 100.0 32 ............................ ATTGTGAGGACGTTCTCAATATGGCCTGGCAC 4539898 28 100.0 32 ............................ TGTCGATATTGCAGGCTGCTATCCGAAAGCGG 4539958 28 100.0 32 ............................ AAGCATTCCAAGCGCGGCGATGGCGTGGACGC 4540018 28 100.0 32 ............................ ATTGAGTGCGTGGACATAAACAATCGATCCAG 4540078 28 100.0 32 ............................ TCGACACATGCACCGTGATAGCAGGGCACGAC 4540138 28 100.0 32 ............................ TGCCAGCCTGTAGGTGTTTTCTTTATGATGCA 4540198 28 100.0 32 ............................ TTGACCACCGGCAGATCACCTGCCCGTGCGGA 4540258 28 100.0 32 ............................ ATTACTCGGCCACCGTGACACTGTAGCCGATG 4540318 28 100.0 32 ............................ AGGTCGTTCGCGACCACTTGGGTAGCCAGTTG 4540378 28 100.0 32 ............................ GTAGCGCACCATGGCGAACGGGCCGAGGATGC 4540438 28 100.0 32 ............................ AGAGGAAAGGCTGTTGCTGCGGTTCTACCGCC 4540498 28 100.0 32 ............................ TCGGTGGGGCTTTTTTATTCAGGAGGTTTTAT 4540558 28 100.0 32 ............................ AGACTCACCTGGTCAAATTCATGGTTGCCGGT 4540618 28 100.0 32 ............................ TCGCACTTCAACAGCTCGTCCGGCCTGCTGCT 4540678 28 100.0 33 ............................ CTCACGGCCCGTGTTGTTTCTGAAGGCGAGACC 4540739 28 100.0 32 ............................ TATAGGGAAGTAGCCATCCACCACCACAGTAG 4540799 28 100.0 32 ............................ TGGTGCAATGCCCAGGCGCTGGAAATCACCCT 4540859 28 100.0 32 ............................ TTGCGCAGCGTTGAGGCCAGCGAAGTACATCT 4540919 28 100.0 32 ............................ TGGAGAAAAGTGATGTCCGTTCGTGATCGCCT 4540979 28 100.0 32 ............................ AGCGCCAGGCGCTCGGCGGCCTTCTCGCGAGT 4541039 28 100.0 32 ............................ ATGGACCAAAAGCGCATTTGAACATCCACCAC 4541099 28 100.0 32 ............................ ATATCACTGCGCTAATAGCAGCGACGATGATG 4541159 28 100.0 32 ............................ TGACGGCCACGACACAGCGCATAGATGACCGT 4541219 28 96.4 32 A........................... TCGTAATGATTTGGCGCAAACTTCCCCCACTT 4541279 28 100.0 32 ............................ TATCCGCGCTTGTCCTGCATGTACTCGACCGA 4541339 28 100.0 32 ............................ ACGAACTGCTGTGCGGCTCCGGCCATAGCCTC 4541399 28 100.0 32 ............................ CGCAGATGATGGCGAAGCCGCCGCCGGTGTAG 4541459 28 100.0 32 ............................ AAGCACAGGTCACAGAGGACGCGACCGTGGAT 4541519 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 4541579 27 82.1 0 ......................TT.CG- | AA [4541600] Deletion [4541606] ========== ====== ====== ====== ============================ ================================= ================== 58 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATCGGCTGATGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //