Array 1 149816-151923 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWUO01000007.1 Mixta theicola strain QC88-366 Contig0007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 149816 29 100.0 32 ............................. ACCATAATCGCCGAGCGCAGCAGTTCTTTTAT 149877 29 100.0 32 ............................. CGTTTTATAACCGCCCAACAGAACAGCGCGAT 149938 29 100.0 32 ............................. CCGCTTCTAATACGGTAGACGCCACGCCCGTC 149999 29 96.6 32 ............................T TCGCCCAGCTCGGCCGCAATGGGTAAAACGCG 150060 29 100.0 32 ............................. GCTCATTTCACAGGTTAGGGTTCGGTGTGTTT 150121 29 100.0 32 ............................. CAACCGAGGCGACCGTGACAGCCACCATGATC 150182 29 100.0 32 ............................. CTGCCGCGCGAGTTCTGTCATGTTGCCCCGAG 150243 29 100.0 32 ............................. GCCGTCCGTGAGTCGATGGTGAATACCTACGA 150304 29 100.0 32 ............................. GCTATCTGTATACCGTGGATGATGAGTTTGCC 150365 29 100.0 32 ............................. GTTAATAACAATGTCTGAAAAATTGATAGGTG 150426 29 100.0 38 ............................. CGTTCGACACCGACACTGACAACGGCGCGCTACTGGCC 150493 29 100.0 32 ............................. CAGATGCGTTCTACAACAGGGCTCATCAGGAG 150554 29 100.0 32 ............................. CCTGGCGTCGGGGAATGAAGCACCGATGGGAG 150615 29 100.0 32 ............................. CAACGGGTGAGTAATTCTGCTCAATATAGTGG 150676 29 100.0 32 ............................. CGACCAATTCTGTCAGAGACATCGAGAATTAT 150737 29 100.0 32 ............................. GAAATTCTGTCGTTCACCACCTCCCGAAACCC 150798 29 100.0 32 ............................. CGTCCACCAGCGAGGTTTGGTGGCCGGAGAAT 150859 29 100.0 32 ............................. GTTCCATTTTCAACCTTGTTTAATTTATCCTT 150920 29 100.0 31 ............................. CGCGCTGCTCGTGGGCGAACCACCAAAAAGA 150980 29 100.0 32 ............................. AATACGACGAGCTATGCCCGGCTTCTTCTTGA 151041 29 100.0 32 ............................. GTGCCCGACAGCGAAATTAACTGGGAGCAGTT 151102 29 100.0 32 ............................. GTATATTGCGACCAGTCCATGTCAGTCATTAC 151163 29 100.0 32 ............................. CGGCCAGTAAATAAAAAAGAACCAAAACCGCT 151224 29 100.0 32 ............................. ATGAATTTGAACATATTTACCTCGGCGTGCCG 151285 29 100.0 32 ............................. GCGGCATTTGATATGGCACGGTTAATAATTTC 151346 29 100.0 32 ............................. TTTTCCAGAGCGTTCCTGCGCGCGGGCGATGA 151407 29 100.0 32 ............................. CAGGAAATGATCGCCTGCCTTAAGGGTCAAAT 151468 29 100.0 32 ............................. GTTTTCAATACGTGTACGCCATTCTTTGAAAA 151529 29 100.0 32 ............................. GAGGCGCTGCTTATGTTTGATGAGCTGAGCAA 151590 29 100.0 32 ............................. GAATCCGTTATCATCAAAATGCGCCTTTATTT 151651 29 100.0 32 ............................. AGCTTTTAATGTCTAACACAGAATTTCCTGCT 151712 29 100.0 32 ............................. ACCCGAAAACGCCGAAAGGTAAGGCGTACACC 151773 29 100.0 32 ............................. TGAACCTGACTTATCCGACAGCCTCCGGCAAT 151834 29 96.6 32 ...........A................. CTACCGGCGAGAAAGGTCGCCCCGGACGTGGC 151895 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ====================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCAGACGGTATGACCAAGCTGATTTTCGATAAAGAAACGCATCGCGTGATCGGCGGCGCCATTGTCGGCACCAACGGCGGCGAGCTGCTGGGCGAAATCGGCCTGGCGATCGAAATGGGCTGTGATGCGGAAGATATTGCGCTGACCATTCATGCTCACCCGACGCTTCATGAGTCGGTTGGCCTGGCGGCGGAAATTTTTGAAGGTAGCATTACCGACCTGCCTAATCCGAAAGCGAAGAAAAAATAACGTTTTTGTAGGTAGATAAAAGCTAACGGCTCCGAAAGGGGCCGTTTTTTATTAGGTAAAGCAAAAGACGGGATAATTTTTCTGTTGATGCTTTTATTTTGTGATAAAGCGACAGGTGCTGGTAGACGTCGGTTGTTATTATCCAAAAGTCTTCAAAATCAAAGAAATAGTGTTATTTAAAAAAGTGGAATTTACTGGTGGATTTTTGCTCCTTGTTTTTTGTTTTTAAAATCAGTGAGATAATTTTAGA # Right flank : GCCTGTCCCGCTCAATACCATACCATCAACAGCAAATGCCGCTTGTGCCCACCGAACGCTTCTGTGAAGCCTAATGGCGCATCTGGCGTATGGTGCAGATCTTTATCTTACGGCACTGCTTTTGAGCTGGCTGGGTTAAATTTTTTATTCAATGCCGGGGCGACACCTGAGGAATTTCCTGCGGGCCAGACTGGTTTTTAATGCGCGCTCGCTGACAGTGACAGGCCCTGACGGGAAAGCGTGAAACAGATAAATATTGTCGAAAATAACGACAGGATTCACTATAGCTAATTCACTAATTCACTAATTCACTAATTCACTAATTAACTGATATAAATGGTTTTTTATGGTTGATGTCTAAATAAAGTTGTGCAATCGTGCAGGCGACAGTTTCCATCATAAGGATATGATGTATGAGCTTCAGCCTGCCCGGAACCGATCTTTATTATCTGCCGCGCGACGATTTGGCCCCGGAGAAATATGAGGAAATTGTCTCTCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163416-164908 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWUO01000007.1 Mixta theicola strain QC88-366 Contig0007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163416 29 100.0 32 ............................. GCGATAAGACCCACTGGATTCTGTTTCTGAAG 163477 29 100.0 32 ............................. GGCGGGTATAGCTCATTCAATAAAATTCAGCG 163538 29 100.0 32 ............................. GTTCGTATTTCCTGTTCTCTGGCACTGCAAGA 163599 29 100.0 32 ............................. CGATCCCCACCATGCCAGATGTAGGCATCGAC 163660 29 100.0 32 ............................. CACATCCTTAAGATCAAGAAATGAGCGACATT 163721 29 100.0 32 ............................. CCAACCACTCATCCGGGCAAAACTGCATTTAA 163782 29 100.0 32 ............................. GTCCGTTGAGTTAGCGTTACGGGCAGTCTCAC 163843 29 100.0 32 ............................. CATTCTCATATGCCCTGTACGCGGGATTCTGA 163904 29 100.0 32 ............................. CGACCAGTACACGTCAGCAGAGATGCCCAGCA 163965 29 100.0 32 ............................. CACTGAATTTGCCTCCCATGTGAAGGCCACCT 164026 29 100.0 32 ............................. AACATAGTCACAATCGGCATACAAAAGCGCGT 164087 29 100.0 32 ............................. CTATGCGTGAGCATTGAAGATAAGAGAAAATA 164148 29 100.0 32 ............................. TTGTTTCGTTGCGAGGTCAGCACCATAGTGGT 164209 29 100.0 32 ............................. GATAATCTGAGGTTTAACCCCAAGGTTATCTA 164270 29 100.0 32 ............................. GCATGGTTCCATTGGTTCTTGCTCTTCTTGTT 164331 29 100.0 32 ............................. TGATAACTCATATTTAACTCCATTTATTTAAT 164392 29 100.0 32 ............................. CCGCTTTTATCGTTGTTCCTGATCCCATAAAA 164453 29 100.0 32 ............................. GTTCGTTGGGGGTGTAACTCATGAGGTGCTCC 164514 29 100.0 32 ............................. GCTCATTAGGGTCCACGCATGGCCTGACCATT 164575 29 100.0 32 ............................. AACATCCGTCTAACGCTATTCCCCGTCTTTCG 164636 29 100.0 32 ............................. CAATTGGGTCTGGAGTACCTGAGTCGTTGTGG 164697 29 100.0 32 ............................. TCACTGTAGTTATAATACTCTATTAAATAAAT 164758 29 100.0 32 ............................. GCTCACATAATAACGATAACAACACACACGCA 164819 29 100.0 32 ............................. ATGTTTCGGTTTGCCCACAGCTCGTTCCAGTG 164880 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATCGAAGACGTGCTGGCGGCGGGGGAAATTGAGTCGCCAGCTCCTCCTGAAGATGCTCAGCCTGTTGCTATTCCGCTTCCGGTATCGTTGGGGGATGTGGGGCACAGGAGCAGTTAACTATGAGTATGTTAGTTGTTGTGACTGAAAATGTGCCGCCACGTCTGCGCGGCAGGCTGGCTATCTGGTTACTTGAGATTCGTGCGGGCGTTTATGTTGGCAATGTATCGGCGCGTATACGTGAAATGATATGGGAGCAAATTTCTGTATTGGCCGAAGCCGGAAACGTTGTTATGGCCTGGTCGACAAATACTGAATCCGGTTTTGAATTTCAGACGTATGGTGAAAACCGTCGTATTCCGGTAGATCTGGATGGCCTGCGGCTTGTGTCTTTCCTGCCTCAATAAAATCAAGAGGTTATTGATCTTTAAAAACAGAGGAAATTTGGTGGAATTAAATGATTTAAATAAATCCTTTAAATTCAATCATATAATTTTAGA # Right flank : GTAAGCAAAAAAGTCTCCTGCTGGGGTTGGTGCTGCGTATAAGAAGATTCACGTACGCGGTAAATCCTTAACCTCAACTGCGCACTAACGGAAAAGCCATTTCTTTCCTTAACAAAACCGCGCCAGCCATAAATTATTTTTATCGTTAAAAAGAGGAAAAAGCGCTGCGCCAGGCATCGTAGCTGGAAAACAGCCTTGATAAATAATGTTGCTTTTTTGTAAACGCATTAACAAGTGAAGCAAATCCTGCTATGCTGGCCGACGCGAAACCGGACACCTTACCCTACATAAGCATCCTACAGATCGCCGTGAAAAAAGGTGGCCGGAAAGCCCTATACAATGAGAGCGAGGAGAACGTCGTGCTAGATGAATACCGTAAGCACGTTGCCGAGCGTGCTGCCCAGGGAATTGTTGCTAAACCTTTAGATGCATCCCAAATGGCCGCGCTGGTTGAACTGCTGAAGAACCCTCCTGCGGGTGAAGAAGAATTCCTGTCCGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //