Array 1 1264551-1271506 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYD01000001.1 Listeria seeligeri strain Ls13-002 Listeria_seeligeri_Ls13_002_Contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1264551 36 100.0 30 .................................... CCTCCGTCTACTTGGTCGCTAGCATAGACG 1264617 36 100.0 30 .................................... GTACCGAAACAGGTGAATTAGTTGATGTTC 1264683 36 100.0 30 .................................... TAATCCTAGCATCCTGCGTTTTTGTAAATT 1264749 36 100.0 29 .................................... ATACTTATGCAATGACAGCGTGGAGATCG 1264814 36 100.0 29 .................................... TCATCTTCACTTCTCACTAATAACATTTT 1264879 36 100.0 30 .................................... CCGGCTCTAAAAAGACTACATGCACGTCAG 1264945 36 100.0 30 .................................... AATTCGTCTAGCATTTCACCAGCAGTAAAA 1265011 36 100.0 30 .................................... ATGACAAAGAAGCTCTCTGCATCATCCCAC 1265077 36 100.0 30 .................................... AACCGGATTAATATAATTACTCACCTTATG 1265143 36 100.0 30 .................................... ATGGTCGCCATGTTCCTGCTGCTGTTATTG 1265209 36 100.0 30 .................................... AAAGGCATTGATTTAAATTCACAAATAAAA 1265275 36 100.0 29 .................................... TCCGCTAGGCGCCTTTCCATTCGTTTTAT 1265340 36 100.0 30 .................................... CTCGTGTCGTTGGGTCATTTACTACACCTA 1265406 36 100.0 30 .................................... AAGCTTGAAAAAGCTTGTATAACCGTCCAA 1265472 36 100.0 30 .................................... AGCTCATATACATACTTTTCCCCATCTCCA 1265538 36 100.0 30 .................................... TAATCCTGTTCCGTAAAGTGTGATAGGATA 1265604 36 100.0 30 .................................... TAAACTGAATATACAAATGTATCATCTGAA 1265670 36 100.0 30 .................................... AGCTCTGTTCTTTCAGCGTCGGACATTCTT 1265736 36 100.0 29 .................................... AAAAGTAATACTTTTTTCTTCTTCAAAAA 1265801 36 100.0 30 .................................... CTAAATCATTTAATTTTATAATAGTTAAAG 1265867 36 100.0 30 .................................... TTAAGGACAAGGTATCAATATCAAATAAAA 1265933 36 100.0 30 .................................... CGTACTTGCTCAGCTAAAGCGTTTTTAAAA 1265999 36 100.0 30 .................................... ACGATTATTTCCTCACCATGTTTGTGTAAG 1266065 36 100.0 30 .................................... ACTTTAATGGCGTACGACTTTTAAATTGTC 1266131 36 100.0 30 .................................... GGGTTGTCAGTACGAGCTAAGAGGTAGTCT 1266197 36 100.0 29 .................................... AACCATATTCGTTGAGATGAATTATTTTA 1266262 36 100.0 30 .................................... ATCTCCTAACGTCACAATCATATTCTTATT 1266328 36 100.0 30 .................................... GGAGCATTGGTGATACAGTCAAATGTAATT 1266394 36 100.0 30 .................................... AAAATAGCCGAATCCAGTACGTACTTTTGA 1266460 36 100.0 29 .................................... AGTGAAGGCTATGCAAGAGTAGCTTATGT 1266525 36 100.0 30 .................................... ATCCGAGGGCAGTATTATCATTGAAGGCAA 1266591 36 100.0 30 .................................... CTAGTTACCTCTGCTATTGCGTTAGCCATC 1266657 36 100.0 29 .................................... GTCGCGATGAACAAGGGTTCTTTTTTTAT 1266722 36 100.0 30 .................................... CAAAAGCTTTAATGTTACTAACAAAGACGT 1266788 36 100.0 30 .................................... ACGCCAGCTGGTGTGCCTGTTGCGACTTTC 1266854 36 100.0 30 .................................... ATCTTTGTCCAACGCATTGAATGAGTCAAC 1266920 36 100.0 30 .................................... CTTTTTCTTCAAATATTATTAACAACTTTA 1266986 36 100.0 30 .................................... AAGTTCTTGCCGAATGAAATTACTGTTAAT 1267052 36 100.0 30 .................................... CCCAACGATTATGGCTTTATATGTGATTAA 1267118 36 100.0 30 .................................... CTGAAAATGTATTATGCTGTTCTTTGATAA 1267184 36 100.0 30 .................................... ATGGATAGTAGTGCCTCACCTAATGTGCTA 1267250 36 100.0 29 .................................... TAGCAAAGATACAGCAAAAAATGTAAATT 1267315 36 100.0 30 .................................... TGCCCAATCTCCTCTGCCAATGTGCAACGC 1267381 36 100.0 30 .................................... GTAAATCTTTGAAGTTTAAAAATTCTACAA 1267447 36 100.0 30 .................................... TGTGTTTCCCACATACAGAGTAGACAAACG 1267513 36 100.0 30 .................................... CTCACAGTTTTAGTAAGCTCTAACTTACTA 1267579 36 100.0 30 .................................... GACTCCTTTTAATGTTTCGTAGAGCTTTAT 1267645 36 100.0 30 .................................... CTATAAAGGAGAATTTTACATTACTGACAT 1267711 36 100.0 30 .................................... ACAAATGTAGGGTTGTTATCGACAGTAACA 1267777 36 100.0 30 .................................... ACTGTGCCAATCCCATCCACCTCAAATTTT 1267843 36 100.0 30 .................................... TTGATAAAAGTAACATCACGAGCGAAGCAA 1267909 36 100.0 30 .................................... AGGCATTGTAGTTCAATTCCCGGGATTTGA 1267975 36 100.0 30 .................................... ATAATTTACGCACGGCAGAACGTGTTTTGA 1268041 36 100.0 30 .................................... ACGAGCATGGGCTTGCATACGATTTTGAAG 1268107 36 100.0 30 .................................... TGTTCTGCTGAATCATATACCGCTAAGGAA 1268173 36 100.0 30 .................................... ACTGGAACCGTCACAATGAATGATGATGGT 1268239 36 100.0 29 .................................... TGAAATGTCCGCATAATATACTTTTTCGT 1268304 36 100.0 29 .................................... TGCTTTCGCGTCTTCTTCTGTCGCTTTGT 1268369 36 100.0 32 .................................... AAAATCTATAACCAGCAATGAAGTAAAAGATA 1268437 36 100.0 30 .................................... AAAGGTCTTACCATTTAGCATAGCTAGTTG 1268503 36 100.0 30 .................................... ACCTTACTTGGAAATAGAAGCGGAAAAATT 1268569 36 100.0 30 .................................... GTTCAGACCCGTATATTTATTATGAACAAG 1268635 36 100.0 30 .................................... TACTCTCTTGCCTTCTCATTCATCTGTGCT 1268701 36 100.0 30 .................................... CCGCCCCATAGAGAATCCCAGCCACTCTTT 1268767 36 100.0 30 .................................... GAGGGAGAAGTTAGAAGCTAATGTTTTAAG 1268833 36 100.0 30 .................................... TGCGGGCTACATTGATGTAGAACAGGTAAA 1268899 36 100.0 30 .................................... ATCGTGGGATATTTGATCATCAGTCAATGA 1268965 36 100.0 30 .................................... TAGCGTTTTCTTCACTATAATCCTTAATAG 1269031 36 100.0 30 .................................... AGAATTATCAGAACTAATTACATCCGTATC 1269097 36 100.0 30 .................................... AAGTAAGTGGTTCCATTGATAATACGTTAG 1269163 36 100.0 30 .................................... TAGTCTTCCAATCTCTTTCGAGTTCTTCAA 1269229 36 100.0 30 .................................... ATCCATGAGTAAGGGTTGCGAGGAGGGTTA 1269295 36 100.0 30 .................................... TCTTACTAAAGTCAACACTTTGTACTAAGT 1269361 36 100.0 29 .................................... AAGATAATTCAAATTTTGCCTTGACATTC 1269426 36 100.0 30 .................................... TCATCGCTTTAACTGCTTCAATCACTTCTG 1269492 36 100.0 30 .................................... GTTACGTTCACCATGTTGTTTTCCCCTGTT 1269558 36 100.0 29 .................................... TTAGCTGAATCATTTAGTTCCCTCCTTAA 1269623 36 100.0 30 .................................... ACGCAAGATGCGGATTATATCTACGCTTCT 1269689 36 100.0 30 .................................... AAGTAGGTGAATATATGAATAGCGATATTA 1269755 36 100.0 30 .................................... AGGCAAAGTCATGTTCTCGGAAGGAGCTTG 1269821 36 100.0 30 .................................... TTCGGAAAGAGGCGGAGGAATGAAGTACCG 1269887 36 100.0 30 .................................... TTAAAGGCATATGGTGGACATGGAGTAATA 1269953 36 100.0 30 .................................... ATCGTGTGAAAGATACTGTTTCACGTGGTA 1270019 36 100.0 30 .................................... CTAAAGTAGCTTTTTGCTTGTTCATAAAGA 1270085 36 100.0 30 .................................... CGCTTGTAATGGAGGGCGTTTTTCAGCATC 1270151 36 100.0 30 .................................... TTATTTGCAACTGGTTCTATCGGAAGAAAC 1270217 36 100.0 29 .................................... TAAGGGATTTGGACAATTTAAAAGAGGGT 1270282 36 100.0 30 .................................... CAGCCTATAATAAGGGAGAACAGACATGGG 1270348 36 100.0 30 .................................... TGGTGCATTCGACTATGCAAGCGTTAAGGA 1270414 36 100.0 30 .................................... GCTGGAGTGAAAAACTATCACGTCATCTTT 1270480 36 100.0 30 .................................... AGGGGAGGAGTAGGACTATATGCTTATTAT 1270546 36 100.0 30 .................................... AGGATATTAAAAGAGCATTTGGCTTTAAAC 1270612 36 100.0 31 .................................... AACCCTATCTCTTTCGCTAGAGACGGCAACA 1270679 36 100.0 30 .................................... ATATTCGAAGTTACCTCGCCGGTTTTAGGG 1270745 36 100.0 30 .................................... TGCTGATAGCGTGCTTCAAAGAGAGATAAA 1270811 36 100.0 30 .................................... ATTACGGAAGACTCAGCAAAAGACCATAAA 1270877 36 100.0 30 .................................... CTTTAGCATAAGGTAGGAGCTCCCCTACTA 1270943 36 100.0 30 .................................... TGAAACCTAAACGGGAAACCTACTCCTTTG 1271009 36 100.0 30 .................................... ATCGCACCTGCACTAGATGGTGTAGACACC 1271075 36 100.0 30 .................................... TCGTTTTGACATTTAATCACTCTCCTAATA 1271141 36 100.0 30 .................................... GTGTTTGAAAACGCTTATCTCTTGCGGGGA 1271207 36 100.0 30 .................................... TATTCAGTGCTAATTATGATGATTCACAAG 1271273 36 100.0 30 .................................... ATATGTGGGATGGATTGTCAGATTCTGCTA 1271339 36 100.0 30 .................................... TACCTTTCTCTGTATACTTCACTGTTTGTT 1271405 36 100.0 30 .................................... CGGTATAGTCGGCGGAAAATGGAGGGATGA 1271471 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 106 36 100.0 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : TTTTTGTTAGATTAAAATGAAAACATGATTAAATATTCCCATTTTTCCGTTTTCTATTTTTCCAGTTAGCTAATTTTGAAAAAATATTATATCTGACTCAATTACTACGTTCATTATAGTTATAGAGCCCCCCCTCTTGCAAGCGGTTACAAGTATTTCGAAAACGGTTTTCGCTGGACGAAAAAAATGGGGGGTGGGGGTGGAAGTAATAAAAAGAAGGGGAATTGAATGGAAATATCCCTAGACATGGTTGTTTAATTTAGGGGTGCTCTTTATTAATTCATTTTTGGAGCAGATATTTTGGTTGTTTAGGCAGCTTGCAATTGTATTTTAGTTCCTCAGCATCAAACCACATTTTTCTAGTAAATCTCTTGCAGGTCTTTGTTACTTTCCGCTTCCATCTTTCTTAAGGAAGCAAATGTTGATGGTTTCATCTCATCATTAAATAAGTATACATTTACCTATTTTCTTCAGTCGCTTAGCATTTTTCATCTATTAAA # Right flank : TGTCTTTTCCATTATACCTCAACCTAAATCAACCTATCAAGGTAAACAATAATATTTGCAGGAATTCCTTTGTAGTCAACGATAATTCGCCATCCATTATAAATGAAAATAAAATAAACTAATACAAATACAACTAAGTTATCCACAGCTTCTAACTTCAATTCGACCGTTTTCCCACCATAGTTATCCACAGCTAACATAGACCAATTTATCGCTTTTATCCAATCCGATTCTTCTACGATTAAAGGTATCTTTTCAATAATTTGTTCTTTTTTAACCATAATTTGTAATTCATTAGCAATATCACCAAAATAAAAATGGTTAATTGCACCATCCATCCAAATATGCTCAGAAATGATAAATACATTGATTCCTCTTGTTAACATTTTTTCAACATGTGATTGAAATTTCTTTATTCCCTCCTCTGAAATTATAGTTTTTTCTGGCATTTCTATAAAAAATAAAACTTGTTTATTAAATAATTCCTTTGTATACATCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1295723-1295307 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYD01000001.1 Listeria seeligeri strain Ls13-002 Listeria_seeligeri_Ls13_002_Contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1295722 29 100.0 35 ............................. ATCGTATTCTTAACTGATTTAAAGGAGGAAATAAA 1295658 29 100.0 36 ............................. CACGGTAAACAACCTTTAATATTTCAACTGTGTCAC 1295593 29 100.0 35 ............................. GTTTCTAAGAATTTTATTAACGTATGCATAATTAC 1295529 29 100.0 35 ............................. TTTCTTGAACGGTTGCTAATTTCACCTCCAGCATA 1295465 29 96.6 36 ..................T.......... AGTTACTCCTAGGTGGGGAACGAGTGGAAATCAAAC 1295400 29 100.0 36 ............................. CCGTCAGATTGATTATAATAGATTGTCCGTTTTTCT 1295335 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 7 29 99.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAATATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGGATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTAAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 5965-5401 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYD01000004.1 Listeria seeligeri strain Ls13-002 Listeria_seeligeri_Ls13_002_Contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5964 36 100.0 30 .................................... GCTGAATTAGCTCAATGAAATAGATAGTTT 5898 36 100.0 30 .................................... TAGTGGAAGGAGTATTTAGTACAACTGAAC 5832 36 100.0 30 .................................... CTTGGTTCGATGATTCAGTGCAATGGATAA 5766 36 100.0 30 .................................... GTTTTGTTCGCCGACTTACTCACACCTTTA 5700 36 100.0 30 .................................... TACCGCATATATTGAAGTATCTGGTGAACC 5634 36 100.0 30 .................................... AGCAAGTTCTTTTGTAGTCATGTCCCGTAA 5568 36 100.0 30 .................................... TATGGATCATTGTGAAATTAGGTGTATCAA 5502 36 100.0 30 .................................... AGATATAAGCCTCAATTAAAAGTGGCAATG 5436 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACGATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //