Array 1 63369-64312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOES010000006.1 Escherichia coli strain ARS-CC11319 NODE_6_length_152515_cov_28.631312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63369 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 63430 29 96.6 32 ...................T......... CCAATACGGAGAACCTTCATCGGTAATGGGGT 63491 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 63552 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 63613 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 63674 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 63735 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 63796 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 63857 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 63918 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 63979 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 64040 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 64101 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 64162 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 64223 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 64284 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90012-91870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOES010000006.1 Escherichia coli strain ARS-CC11319 NODE_6_length_152515_cov_28.631312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90012 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 90073 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 90134 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 90195 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 90256 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 90317 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 90378 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 90439 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 90500 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 90561 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 90622 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 90683 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 90744 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 90805 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 90866 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 90927 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 90988 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 91049 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 91110 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 91171 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 91232 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 91293 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 91354 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 91415 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 91476 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 91537 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 91598 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 91659 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 91720 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 91781 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 91842 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //