Array 1 128751-131418 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDST01000009.1 Vibrio cholerae strain S12 VCS12_contig000009_Vibrio_cholerae_strain_S-12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 128751 28 100.0 32 ............................ TTTTCCTCTTGGCAGTACCGCTCGCATTGTCG 128811 28 100.0 32 ............................ TCTGGCGAATCAGCATTGATCCCCAAGGCGAT 128871 28 100.0 32 ............................ TTAATGATGTATAATTTAGCATATAAATGTAA 128931 28 100.0 32 ............................ TTGAGCAGCCCGCCATGAGCGTGTGCTACGAG 128991 28 100.0 32 ............................ TTCATCTTCAGGCTTTTGAGCAAAGAATTTGA 129051 28 100.0 32 ............................ AGATTTGGAGCGAGGCGTATGCACGATGAACT 129111 28 100.0 32 ............................ CGGATCAGTCCAAAGCGCGAAGGCCAAAATAA 129171 28 100.0 32 ............................ GTTTATTTTCAATAACTTACTATGTGTTAACA 129231 28 100.0 32 ............................ TTGGTACTTAACCACAAACCAAGATCCTTTGG 129291 28 100.0 32 ............................ TAATTATGAAGAAACCTGGTCTCAGATTAAGA 129351 28 100.0 32 ............................ TTCAGCGATCAGCTTTTCAGCTTCCCGCTTTG 129411 28 100.0 32 ............................ TTTCTCTTCTCACACGATGCCACGCTACAAAG 129471 28 100.0 32 ............................ TCGAAGAACACCATCAAGATCTTCACGAAAAT 129531 28 100.0 32 ............................ CGAAGGTGGCTTTCCGCACAAACTTACATCGA 129591 28 100.0 32 ............................ TATCGTTTGTGGTTTATGTGATCTATAGGACA 129651 28 100.0 32 ............................ ATCTGACATTTCTTTTTCAATTTGCTGCCACA 129711 28 100.0 32 ............................ GCAAGGCGCATTTCGCGCCCCATGGCATAAGC 129771 28 100.0 32 ............................ CGATCAGGATACTGCTGGCCGATGAGGTGGAC 129831 28 100.0 32 ............................ TCTACATCATCCGCGAAAAGTGGGAATTCATC 129891 28 100.0 32 ............................ TTGAACTGTTCAAACTCATGATCCAGATTAAC 129951 28 100.0 32 ............................ CGGACCGTGGCGAACAAGTCGCGTCCCTTATC 130011 28 100.0 32 ............................ TTTATTCACTAACGCCGGAGAGGTTTGGATCA 130071 28 100.0 32 ............................ TTGGGCATCAAGCAGCACTGTTGCTGCCCGTG 130131 28 100.0 32 ............................ TAGATAGCTGATGTTGCCTGCGGTTAAATCTG 130191 28 100.0 32 ............................ GTGAGGCCGAACTTATCACGCACCGATGAAGC 130251 28 100.0 32 ............................ AGTTGATATTCGCAAATCGATGCGTTTTTTCT 130311 28 100.0 32 ............................ ATTGCCGACTTTGACGCTGCGCTTTTGCTGCG 130371 28 100.0 32 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTT 130431 28 100.0 32 ............................ TTATCTATGATTAAAGACGCTCACGACCGCCT 130491 28 100.0 32 ............................ ATTGAGCTAATTTGCTGTGTCGGACTTTTGCG 130551 28 100.0 32 ............................ TGTAGGAACTAATGTGAAATGATTGACGTACT 130611 28 100.0 32 ............................ TTATTTTTTGGCTTTTACAATTCGACCGCCTT 130671 28 100.0 32 ............................ TGATAACACCCACCGGACGCGAATTTAGCCCG 130731 28 100.0 32 ............................ TGTAGCAACATAATCACGCGCATCGTCAATCA 130791 28 100.0 32 ............................ ATTACTACACTGCATCAAAAGAACGTGCATCG 130851 28 100.0 32 ............................ TTCGATATTTCTTATTGTGTCATTAAAAACTT 130911 28 96.4 32 ...........T................ GCTCAGTGATTTAAGCGCGTTGATGGATTGGG 130971 28 96.4 32 ...........T................ TGAGAAGGAATCTAAGTGAATGAATGAATTAG 131031 28 96.4 32 ...........T................ AAGCCACCAAAGGGACTCTAATTGCGTCATTA 131091 28 96.4 32 ...........T................ TTTCAGCGCTTCGGGTTCGGTGGTGACTGTAG 131151 28 96.4 32 ...........T................ TTTACGCTTCTCTCTGCGATCCCTGCGATATA 131211 28 96.4 32 ...........T................ TTTAAGTGACCGTTCTTTTGATTCGCCATTTG 131271 28 96.4 32 ...........T................ GAAGCAATCATGACCATAGACATACTCGAATC 131331 28 96.4 32 ...........T................ AATACGGCCATTGGACAAAGCATTGTTGAACA 131391 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================ ================== 45 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACCGCGACAGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAAAGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAACTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGACCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //