Array 1 87471-88840 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOO01000004.1 Salmonella enterica subsp. enterica serovar Gaminara strain 159 NODE_4_length_273481_cov_21.2805, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87471 29 100.0 32 ............................. GCTGTTTTTGCCCGCGCCAAAGCTGACCTGAT 87532 29 100.0 32 ............................. CCCGGTTTTACCGCCAACACTCACTATATTGT 87593 29 100.0 32 ............................. CGTTGCTGGCTATTCGAACTAACCTGATTGTT 87654 29 100.0 32 ............................. GCCTCAGCATTGTCATAACCCCACGCCTGGCA 87715 29 100.0 32 ............................. GCAACTTCTTATATGTAAAAAACCGTTATGAT 87776 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 87837 29 100.0 32 ............................. GCAATATGAATAACAACGTACCACTCATCGCA 87898 29 100.0 32 ............................. GAGCACTTTTACTGTAGGACTTGTATGAATCT 87959 29 100.0 32 ............................. CGGCCGTAGCGCCGCTCAGTCCGGGGGATGGT 88020 29 96.6 32 ...........A................. CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 88081 29 93.1 32 ..G.........T................ ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 88142 29 96.6 32 ..G.......................... CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 88203 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 88264 29 93.1 32 ..G...........T.............. CGTTTTTTTTATTTGTACTATTGTCAGTACCC 88325 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 88386 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 88447 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 88508 29 93.1 32 ..G.........T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 88569 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 88630 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 88691 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 88752 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 88813 28 86.2 0 ..G.........T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 96.4 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105601-107034 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOO01000004.1 Salmonella enterica subsp. enterica serovar Gaminara strain 159 NODE_4_length_273481_cov_21.2805, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105601 29 100.0 32 ............................. GCGCTGATCCAGGAGTGGTGGCGGACAACCTA 105662 29 100.0 32 ............................. ACATGTTCGTAACCAGGAATCCCCGGACGGCA 105723 29 100.0 32 ............................. CTCCAGCTCAATAGTGTACTGGATGTTGATCC 105784 29 100.0 32 ............................. GTACCGGCTATGTGGCAGGGCTGCGCACAACG 105845 29 100.0 32 ............................. CCCGTCCACTGCTGGATGAAATGATGGAATGT 105906 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 105967 29 100.0 32 ............................. CGCCAGCGCTGAGGTGAATTTTAACGGTGTCA 106028 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA T [106031] 106090 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 106151 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 106212 29 100.0 32 ............................. GTACGTTGCCAGATTGCTTTCAATGATGGCGT 106273 29 100.0 32 ............................. TACTGACACCTCAACCTTTTATTTATAAGCCA 106334 29 100.0 32 ............................. GCCGGGGTTTCCCGGAGGCATTCTGATGAAAG 106395 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 106456 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 106517 29 100.0 32 ............................. AAAACCCAGGAACGGCACCAAAATTTACACAT 106578 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 106639 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 106700 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 106761 29 100.0 32 ............................. GAGCATACGGAAATTAAAGGGGTTAACGATCA 106822 29 93.1 32 ...........................TT TAATCATTTTGTTTAAATCCCGGATCACCTCC 106883 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 106944 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 107005 29 96.6 0 ............T................ | A [107032] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTATTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //