Array 1 5892-6221 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLWF01000060.1 Shewanella fodinae strain 74A Ga0227276_160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5892 28 100.0 32 ............................ GACGACAGCGGCGTAAAGTTCTGGTCGTGCAT 5952 28 100.0 32 ............................ TGCATGTGCCATACAGTGTGGGAAGGGTGCCC 6012 28 100.0 32 ............................ TGTCTCCCTCAACGGGAGGCCTGGCAACGTCA 6072 28 100.0 33 ............................ TGAAGGGTTTAAGTTCGTTTATCAGCAGTTCGT 6133 28 100.0 32 ............................ ATAAATGGAATGTGGCCACGATTCTCACACAA 6193 28 96.4 0 ..........................C. | T [6218] ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTTACTGCCGCGTAGGCAGCTGAAGAA # Left flank : GAGTGATTTTGGCTTCTTCTCTGTAAGTGAAATAATAAAAGTGCCTGAAAAATGTATCCAAGTTCGGTTTTTAAGAAATCAACACTACTCAAAGCGGTTTCCAGGTAGCGTGCGAAGGCGAGTTGAACGACTTAAGCGAAGAGCTGCGGCTAGAGGAGAGGAATATGTGCCTAGACCTTATAATCATGAAACGGAATATGCACTGAGCCATAGTGTTCCTGCTAAAAGTATGAGTACTCGACAAGAATTCATACTTCATATCCAAAAGGAAGTGGCTGAAAATGAAGTTATACATCTTTTTAATGGCTATGGACTATCAGATAGAACTTGTGCGATAGGAACAGTGCCAGAGCTCAAAGGATTACTTTGACCTTATTCTTTGATTGCGATATTAACATATTGATTTATAATGTGATTTTTATAAAGCAAGAAGACAAGGCTAAATGTTCTGATAGAGCTTAACTATCTGTTTTTAAATGAGTAGAGAGTAAATGTTCATT # Right flank : TATTCCGGCCGGATCTGAACACCTATTCCGGAAACACTTGAACACCTGTTCTGGAATCATTTGAACACTGATTCCGGATTTATTTAGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCGTAGGCAGCTGAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 3274-2586 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLWF01000065.1 Shewanella fodinae strain 74A Ga0227276_165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3273 28 100.0 32 ............................ ATTTCCTGCATCCGATGCATTCAAGCACTATT 3213 28 100.0 32 ............................ AATGACATAACCGATCCACTGGGAACAGTTAC 3153 28 100.0 32 ............................ GCCGCCAGAATTGGCACGCGAGCTACGTGTAA 3093 28 100.0 32 ............................ ATTATATAAAGCGACAGCTCTCTGAATAACAT 3033 28 100.0 32 ............................ GCCGAGCCGATCGAGCGATAACGCTGCTTGAC 2973 28 100.0 32 ............................ ATCAGCAGGCTTTTTGCTGAATTCAGCGACTT 2913 28 100.0 32 ............................ ATCCGGGTAACCCACTACGTCATAAAATCCTG 2853 28 92.9 32 ...C.......T................ GGAAGACGTAACCGGCACCCTTTCAAATGCAT 2793 28 96.4 32 .........................T.. TATAGGGTGAGGCTACCTTAAGCGGCCCCACT 2733 28 100.0 32 ............................ ACGTTACACGGTTTTTGCAGTGCTTCGTCATA 2673 28 96.4 32 ...........T................ ATTTGGATTGAAGGGCGCAAGTTGGCTATTGG 2613 28 78.6 0 ............A....A..A.AC.T.. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.0 32 GTTTACTGCCGCGTAGGCAGCTGAAGAA # Left flank : GAACACCTGAGGTAAAAATGAGTTAGCCAACGATGCGTTGATCCAAGGTGTTCAAATAAAACCGGAATGGATGTTCAAGTAAATCGGAATCCGCAGCTGAAGAAGGAACCATTAATAATTTCACTACGAATTTCA # Right flank : GCAGTATGGAATTTACTCATTAGATTGCTGTAATTTTTCAATGAATTGCAGCAATTTTTCTTTTTCTGCTTTAGGTAACTTTTCAATTTGTATCGCTAGTTCAGCTGACAAGTCATCCTCACAAAAAAAGTAGCTCATAGGCACACCTAGTGCCTTCGCTAACTTTCGCAGTGTGCTGATATCGGGAACATGCCTCCCTTTTTCATAGTGGTTCATACGGCCGCTAGCAGAACTTTCTTCCATACCAATCATCACCCCCAAGTTCTTTTGAGTGATGCCAGCACGTTTGCGAGCTTGTTTGAGCCTAAGTGGTATCGGGTTATCTTCCACGAAATCATCAATTTTATAGCCTTTAGATAACTTAGATTGTCTAAGTTTTACTTAATTTTGTATACTTAGCAATCCTAAGTTTTTAAAGGCTCTTGATTGAAAAGTGAAACGTTCTAAAAAAATCAATGCAATCATGTACAAACTGTTAATTGAAAAAGAAATGGATGCCT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCGTAGGCAGCTGAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //