Array 1 15588-16695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCUB010000004.1 Pasteurella multocida strain ysq-001 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15588 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 15648 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 15708 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 15768 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 15828 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 15888 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 15948 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 16008 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 16068 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 16128 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 16188 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 16248 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 16308 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 16368 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 16428 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 16488 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 16548 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 16608 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 16668 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 111600-113098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCUB010000001.1 Pasteurella multocida strain ysq-001 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 111600 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 111660 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 111720 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 111780 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 111840 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 111900 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 111960 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 112020 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 112080 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 112140 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 112200 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 112260 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 112320 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 112380 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 112440 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 112500 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 112560 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 112620 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 112680 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 112740 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 112800 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 112860 28 96.4 124 ............G............... TCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACA 113012 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 113072 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 24 28 99.1 36 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //