Array 1 188053-188570 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE383937.1 Oceanospirillum maris DSM 6286 G517DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188053 29 100.0 32 ............................. GTACAACTGTAGAGGTTCTCGCAGAGGCTAGT 188114 29 100.0 32 ............................. ATGAACTCCGTACAGATTCGCGCCTTCTCGCA 188175 29 100.0 32 ............................. GGGAATGCAGCCCCAGTATGCAAATAGGCCGT 188236 29 100.0 32 ............................. GGAATTTATGCTCAAATTGGGGTTATATTAAA 188297 29 100.0 32 ............................. GCTCACTTCAAACCCGGATACAGCTATAAAGG 188358 29 100.0 32 ............................. GCGTTGATTGTATCCGGTACTTTTAATCCGGA 188419 29 100.0 33 ............................. TTCAGACGCGTCAGCAGGTTTATACCCCATCGC 188481 29 96.6 32 ...C......................... TGCTGATCAGTTAATTTTTGACGCGCGTGCGG 188542 29 89.7 0 ..A......................GT.. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.5 32 GTGTTCCCCGTACCCACGGGGATGAACCG # Left flank : GGAGATTTTAGCCGCAGGAGATATTAAGCCACCTGAGCCCCCAAAAGATGCTCAACCTCCGGCTATTCCAGAACCTAAGCCCACGGGAGATATAGGTCACAGGAGCCATCAATGAGTATGTTGGTTGTCGTCACCGAAAATGTACCTCCACGATTACGAGGAAGACTGGCTGTCTGGTTGCTTGAAGTAAGGGCAGGGGTTTATGTCGGTGACGTATCTAGAAGAGTCAGAGAGATGATCTGGTATCAGATTAACGAGTTGGCAGAAGAGGGTAATGTTGTTATGGCTTGGGCAACGAATACTGAATCTGGCTTCGATTTTCAAACATACGGAGATAATCGACGAGTTCCTGTAGAAATGGATGGACTTCGATTGGTTTCCTTTTTGCCATTAAAAACTTCTTGAATAGGGTGCTCTTTAATAGTTTAATTTTTGTTAATCTTGTTGGTAGATTTTTTATAGGATAAAAAAACCTTTAAAAACAATCATATCCAGTAAGA # Right flank : GTGACTGTGTTAGGATAACGATATTGAAATGCAGTGTTCTCCATACGGTGGGATGATCTCTGGTAAGGCTTGACGGGTCTTCGTTCTATAACAGATTGCTGCCTGTTTAAGTCTTATTATCACTGCGCTTTTGTAGAAAAAGGTTTTTTGTATTAAGGGGTTTAAGAGATTTTATGACTCGGCTAAAAGATATCTTCAGCCAGCGGCGGTTAATGATTTTTTTTCTACTGTTTACCAGTTTGCATACGATGGCGGCGACACCTCTAGCGGACTATTTTATTGAGACGTGGACTTCACGGGATGGCCTTCCCCACAATAGTATTAATGCGATAGCTCAAACTGATGATGGTTACTTATGGTTTGCTACTTGGGAAGGTGTGGCCCGCTATAACGGGTTGGATTTTAAACTTTTCACCCGTGGCAATGATACTTTTATGAAAGACTCCGGCGTGAAATCCCTGGTTGCCTTGGCAGATAATCATCTTTTAGTGGCCGGAGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 192111-193518 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE383937.1 Oceanospirillum maris DSM 6286 G517DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 192111 29 100.0 31 ............................. ATTTGAGCCACGTCTGACTGATACCACCCCT 192171 29 96.6 31 ............................T ATTAGCGTACGTGCTCGATTGGTGGATCTCA 192231 29 96.6 31 ............................A CTCAACCAACCCACCAAATGATCTGATTTGG 192291 29 100.0 31 ............................. CCGTGGACGGGTAAGGTTTGGCGGAGATCAC 192351 29 96.6 31 ............................A TTGTTGCTCGTTGCTCATCCAGCCAGACTCC 192411 29 100.0 31 ............................. GAATTAGTAACAGCAGAATAAACAGTTAAAT 192471 29 100.0 31 ............................. GTTGGTACATGGGCGAGAGTCCCGCCAAAAT 192531 29 96.6 31 ............................A AATACGCCAGAGATGTCGTAGCCGGAAAGAT 192591 29 96.6 31 ............................T TTTGCGAAACACGGCTTAGGCCGTGTCTGCC 192651 29 100.0 31 ............................. GCAAAAACTCGGCGACTGTCCAACATAGCCA 192711 29 96.6 31 ............................C CCAGTAGGGAGAATCTACTCTGTAAGAACAA 192771 29 96.6 31 ............................T GTTGTGTCAACAGATCGACCCTCATTTGCAA 192831 29 96.6 31 ............................A ACATAGCCAAGAACAAAAAGCCTGCCGCAGA 192891 29 96.6 31 ............................T TTAAATTTTATCTGATACATAGCACGCGGGG 192951 29 96.6 31 ............................A CCTATACTAATTTTCTCATTTTCGACCAGAG 193011 29 100.0 31 ............................. CCATCAAATTGACTGGTAGAGGGGATTGGAA 193071 29 100.0 31 ............................. ACCTGGACAGTTTTATCTGTTTGTGGATCTC 193131 29 96.6 31 ............................A TAGGGGACAACCCTTTAAGGCTTAAAGTTTA 193191 29 100.0 31 ............................. TCCTGTCCTCCGGCTGCTTGCAGACGATCAG 193251 29 96.6 31 ............................A TGTACTGGCCGTCGATAATCTGGTCAACGAT 193311 29 96.6 31 ............................T GTTGAGTCTCTACGTTCTGAATTTGCTACAT 193371 29 96.6 31 ............................A AGGTGCAGATGTTGCCCGAACAGCTGAAAAC 193431 29 100.0 31 ............................. TTAAATTGTCGGGCTAAAGCCCGACCTACAG 193491 28 72.4 0 ...TG......T....AT...-.....TA | ========== ====== ====== ====== ============================= =============================== ================== 24 29 96.9 31 GTTCACCGCCACATAGGCGGCTTAGAAAG # Left flank : CATGCTCTACTGAAGGCAAAACAGAATGGACGAAACCGCGTGATCATTCACCAAACATGATGGTCGCTCTATTGTAACCGCTCACTGGATGAAAGAGGAGTTGCAAGGAAAGCGTGAGTGTAGAGAGTTCCTGTCACAGCTCGTGACTTTGAACCAAAAAAATGGCTCTTTAAAAATAAGTAATAAAAACAGCGGGTTACATTGAGACTAAAAATAAAGGTATTTATTGGTATTTTTATCTAAGTCTTTGTTGTAACTATTCTTTGTGGTAAATTTTTATTGTTCACCGCCACATAGGCGGCTTAGAAAAACTTTACCCGTCCACGGCGGCATCGTGGCGGGTTCACCGCCACATAGGCGGCTTAGAAATGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAC # Right flank : AAATTTATCTGCGGCTATTGTTTGGGCATTTATTACCGTTGCTGTACAGAAAGGATTCAGGCATATAGCACAATCGTCCCGCCACCTGTGCTACGTGCTGGGTCATTGGTCGGCCTTCGGGAGCCTTCTCTTGCATCGTTATATACCTGAATTGGTGGGGTCAGTGTCGGCTCGCCATCCCCGAATGACTCATCAGCTAAGTCGCTGGACACACCAGGCATATATTGGTCTCCTGACCCCTTGAAAAGTATAGGCACGCTCATCATTGAAATCAATGGCGGCCTGCCGCGCGGGAGGCACCCACGCTAGCCCTCATCAACGCCAAGGCGAAGGGGTCGGTAGCCATACGGATGACAGGCCTGTCTTTATTCTATAGGTAAAATATAACGATTAAAAACGCCTGTTTAAAAACGAAACGGGTACCAAACCTAAGTTAGGCACCCGTATTTGATAGCGTTGACCACGGGGCACGCGCTCCCCGTTAGACCTCATCAATCCCG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACATAGGCGGCTTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 216995-219302 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE383937.1 Oceanospirillum maris DSM 6286 G517DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 216995 28 100.0 32 ............................ TCCATGGTTTTTGTCTGCATTTGTTGCGACAA 217055 28 100.0 32 ............................ GATAAAAATTAGGCCCGCAACAAATGGCCCCT 217115 28 100.0 32 ............................ ATTCGGAGAGCAGCAGCCATCCGGCCTGTTCA 217175 28 100.0 32 ............................ CTTACGTTGCCTTTCACATATCCTTTGCTGGG 217235 28 100.0 32 ............................ GGATTAAATGCAGATACGCCACCGATAAAATT 217295 28 100.0 32 ............................ TACCATTATTCTGTAAGTCTCTGATACATCCT 217355 28 100.0 32 ............................ AGCAGTGTAAATGAGTCTTTAAAGGTTACAGG 217415 28 100.0 32 ............................ TGTGTAAGTCTCCTTGTAAGGTTCTCTTATAG 217475 28 100.0 32 ............................ ATCCATCTCTCCGATTTCTTCATACCAATCTA 217535 28 100.0 32 ............................ CGCATCAACAAAAATGTCAGGGGTTTTAGCGC 217595 28 100.0 32 ............................ GATAATCACCACCATTTGGGAAATGTCTTTCA 217655 28 100.0 32 ............................ GCCGAATCTGGCGACCACACCCGAACCGCTGC 217715 28 100.0 32 ............................ TCCATCACTGACACATCAACCGCCGAATCTGG 217775 28 100.0 32 ............................ TTCACCCGCCTTGATACCGTCTCCAGCCTTGA 217835 28 100.0 32 ............................ TACACCGCTGCGCTCAGCCCTGAACCCGACGC 217895 28 100.0 32 ............................ AGCCACGGCAGCAGATGCGCGGGGCAGGTGGC 217955 28 100.0 32 ............................ ACTACGCTATAAATCTCATTGGAGTTTTTCAT 218015 28 100.0 32 ............................ AATTCAATAATTTTATCTAGTTTCATGCCTCC 218075 28 100.0 32 ............................ GGTGCCTTCGATTAGCGGCCATGCTTTGCCTT 218135 28 100.0 32 ............................ CGGCACCTGGTCGGATGTTGCAGGCCGTTTAA 218195 28 100.0 32 ............................ AGTGCTGCGGTGGCAGCATCGGTGGCGGTGGC 218255 28 100.0 32 ............................ GCAATGATATTGCATTTCAGGCGATAAATAAC 218315 28 100.0 32 ............................ GTCGCGTGCTCGATGATTAAATTAATATTTGA 218375 28 100.0 32 ............................ AGCCCCACCGGCAGCAAAAATATAATTATTGT 218435 28 100.0 32 ............................ ATTGCTCGCGCGTTGGCTAACATACGCTGGGC 218495 28 100.0 32 ............................ AGCAGCAGCGAGTTTAAAAAACGTCTGATGGG 218555 28 100.0 32 ............................ CGTTCGCTGACTTTTACACCGGGGAAATCAGC 218615 28 100.0 32 ............................ GACCATACCACGGGCTGGGTTTACCTTGAGTA 218675 28 100.0 32 ............................ TGATACGGTCGCTGGAAGTGACTCACGGAGAT 218735 28 100.0 32 ............................ TGTCCATGGCGGCATCGTTGCGGCCCCGAGGC 218795 28 100.0 32 ............................ TGTTGGCCCCTGATATGCTCTAACAATTGGGG 218855 28 100.0 32 ............................ TGATACGGTCGCTGGAAGTGACTCACGGAGAT 218915 28 100.0 32 ............................ TGTCCATGGCGGCATCGTTGCGGCCCCGAGGC 218975 28 100.0 32 ............................ TGTTGGCCCCTGATATGCTCTAACAATTGGGG 219035 28 100.0 32 ............................ TTTAACCTGCAGGCATAGGGCGACCGTTTACC 219095 28 100.0 32 ............................ GTGCGCGTCGTACAGCTCAACAGCCGCCGCGC 219155 28 100.0 32 ............................ TGTTTTATACAGCGCCTCCGATTTTGTGACTT 219215 28 100.0 32 ............................ AAGCGTTCCAGCGCCTCGATGACTTTAATTCC 219275 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : CACAGCACCACTAGATACCGCTAGTTCACCGCCACACAGGCGGCTTAGAAACAGTGGTTGCATATCCGTTTAGTAAACCTGATGTTCACCGCCACACAGGCGGCTTAGAAAACCTCCCGCACCTGCGTCGTCAAAACAGACACGTTCACCGCCACACAGGCGGCTTAGAAAGATGAGGTATTAAAATGATGTTTCATACCAGTGTTCACCGCCACACAGGCGGCTTAGAAAATAAGGCGAGGCGAGAGAAGGAAAGAGCTATGGTTCACCGCCACACAGGCGGCTTAGAAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACCGCCACACAGGCGGCTTAGAAAAACAGAACTGCCTTTCTCCGGGCGCTTTCGGA # Right flank : GCGACAGCCTGTCGCCCTAAAGGTTGACCTACAGTTCAGCGGTGTAGTGCCATTGGTGCATGACGCTTCGCTTATGACACCTTACGATTGTGGTCTATAGGAAAGGACTGTATCAGGTTTAATTGCTGTTTGAAGCTTCGCTTATGACACCTTACGATTGTGGTCTATAGGCAAGGACTGTATGAGGTTTAATTGCTGTTTGAAGCTTCGTTTATGACATCTTACGACTGTGGTCTATAAGCAATGACTGTATCGGGTTCAACTGCTGTTTGAGGCTTTGCTTATGCTCTTTGCGATTAGGGAATAACTCGGAGGGGGGGAGGGTGTCATAAGATGCGAGGTACGAGCAGCGTCACGCACCATCTGTTTTTGCAGTGAGGTTTGGTTTAAAGCGGTAGGGCATGATGGACGTGCCCGTTATAAGGGATTCGCCCATCATTTTGTGCGAGGATTAGCCGATGGTGATTGGCGGTAGTTCTGGTGCTTTTAGTTCTGCTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //