Array 1 120210-118920 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAU01000006.1 Streptococcus salivarius strain AF10-23 AF10-23.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 120209 36 100.0 30 .................................... AACGAAGATTTTTACTTACACATTGCAAAC 120143 36 100.0 30 .................................... CTTTGATGTTGTTGAAGAAAAGGTTAATTT 120077 36 100.0 30 .................................... TAAATTTGGGGTTAATCTAGCCTACCACAC 120011 36 100.0 30 .................................... TTGTCCGTCCTGGTTTCGTTGTGCATTTTT 119945 36 100.0 30 .................................... CATATGATACATCAGCATTAATTATTTATA 119879 36 100.0 30 .................................... TACCACGTTTGAAATTTCAGTCCTAAGTTC 119813 36 100.0 30 .................................... GATTATCAATGAGCTGACGCACTGGGATAA 119747 36 100.0 30 .................................... ATCTTTTGCGTTAAAGTTATTACGTTCTGC 119681 36 100.0 30 .................................... TATGGGTATTTATATTATCTAAGCTTAGAA 119615 36 100.0 30 .................................... TGTCATTGTATTTCCAATGATTTGAACAAT 119549 36 100.0 30 .................................... TTTGCGCCCATGCTTGAGAGCTGATTGACA 119483 36 100.0 30 .................................... TTTTCTTGCATGGTTTCTAGCCACTGCTTT 119417 36 100.0 30 .................................... CTGCTTCCTCTGCTTTTGTTTTTGCCAGCA 119351 36 100.0 30 .................................... AGGTGTTTAAAATATGGCACAACTTAAAAA 119285 36 100.0 30 .................................... CTTGGGTGTGACCACACCAGACGCTCGTAT 119219 36 100.0 30 .................................... CAAGTTGACCTTGCTTCAAAACGCACGTCT 119153 36 100.0 30 .................................... ATCGCACTGACCGCACTTTTTACGCGGCAG 119087 36 100.0 30 .................................... GCTGCCGTTCCTGCTTAAAACCGTCCATGT 119021 36 100.0 30 .................................... TGAACTAATTAAGACGATTGGAGAACACAA 118955 36 80.6 0 ............CC...............T..CCCT | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAGAGAATTTTGGTGTTCGTCAATAGTTTGTCGTATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGAAAGATTAAAGGTATTCAACAATTTATTTTGGATAAGGATTACATTTTGATGCCTTACAATAACTAGTAATTTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTACATGAAGTTGAGTGGAAGAATCATTTTGTTAGAGAGTAGGTTATAAGCTATCTGATAGGTGAGAAGGTAAGTTGATTGGAAAAAGATTTCTAAAATTTTTTCGATATAGCGACAGCTCTATTTGTTAAAACGTTGTTATATAAGGCTTTTTAAGGTATAATAAACATAAAAATGGAATCATTTTGAAGCTGAAGTCAGGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAGAAAAATGACCTACGAG # Right flank : CTCTTTGTAACGATTTTGGGTTGACTTCTCCTTAAACTCATCCTATCATAGAGGAGTCTAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGACTTTGGCCGTAGCATTAGGGCAGATTCTTTGCCTCTTGCCATGACGAAAGCATCTGTGTTTTTATCACATATTATTAAAAGGTATGGAGATAAGCCTTTACCAGAGCCGACTGCGGTTAGCAGTATTCCTAATGAGGAAGAACTCGTCGTTTTGATTCAAACAGAGCTTGATTAAGACTAAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAGGACGACTAAAATGCCTGCAAAAATTTGTAGCTGCGAGAAGGGTTCTCCTAAGACGACAACAGCAGCTAGAATTGAGATAATGGTCGAAATCCCAATAAAGGATGCTGTTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //