Array 1 90050-89488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXQX010000007.1 Prevotella buccae strain SCHI0047.S.4 Contig_7_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 90049 36 100.0 29 .................................... GTCCTCTGAAGGCTTAGAATTGGCTGTAG 89984 36 100.0 30 .................................... CATACTTCTAAGGTATCAAAGGCACCTATC 89918 36 100.0 30 .................................... ACCTCCTTAGTAGAGGATTTGGACTTCTCA 89852 36 100.0 30 .................................... GTACTACAGTTACGATATTTTTACCTATCG 89786 36 100.0 29 .................................... AGATGATTGTTGTATTGATGGTTTTCATG 89721 36 100.0 30 .................................... TCATTGAATCAATTATTGCGCCTGCAACGC 89655 36 100.0 30 .................................... CGTTTTGAGTCGTTTTCCTTTTGGTGCAAG 89589 36 100.0 30 .................................... CCTTAGCATATATAGATGCCAATAATTCAA 89523 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGCATCTGCCTTCTTTTTGAAAGGTAAAAACAAC # Left flank : AGAATATTGAATATGCTAAATACCAAGCTGTGTTACAAGCACATAAAAGCCTGTATAGACTACTCAGATTTACTACAGATACTGAAAATGAAGATAGCATATTGATTTGGGAAAGACCAAAAGATGGTGGACTAGAAGCAACCTATTATTTCAGAAAAGGAAACATACGTAAATTTATAAAAGAGCTTTCCAAAGAAATATATAAACGAAGGATGTGGTATTTTTATGTCAAAAGAGGCTCTGTCACTAATTTCCGAATATAGAAACATTGTTTATGGTTTCATGCTTTCCGCCCAAAACAATCCCCAAGAAACAATAAGAATAACTAATAGAGAGTCTGTAGAACGAATGAAAAAGATTCACCAAAACCTCTCGATAGAAATCAGACAAGCAATCAATCTGAAAAAACGAGATTTAAGATTTTAATAAATAAAAAGTGAGGAAGTATAACCTAAAAAACAAAGAAAACAGATTGGAAATGAGTCGTTTACTAAATATCC # Right flank : TGCTATTTTATGAATGGAGATTATTATCTTAAAACATAATATTTCGTCATCTCAAATTGAGACATGAGACAGTTATCATCAAATATTAAAGCAAATAATTTTTAAGAAGGATACAAAGTATAAACAAATATAAAAGAGAATTTGGGTCTCGTATGGAAATTCTGTAAGAATCAAAAACTTATATAAAATACGCGATGGGATAAAACGTGATCAAACATACTCATCTTAAATGAAAAGAAAAATGAAAAATCTCTTCTCAAACAAGTCTTTGTTCCCTAAAAAAGACACAGCAAAAGATTCCAAGAGAACCTTTTGCAAGATAAACAAACCATCTTGCAGATTCTACAAGCCATAACAAAGGGACCTACACAATTAGGCCATGAAAAAAGGGAAGCACACATGCACTCCCCTTGCCAACAAAAAATTACAAAATAAATGGACAGGACGTAAAGCGACATGAAATAAGTCGACTACTCTGACATACCATCATAAAATTGACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTTCTTTTTGAAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 126099-124366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXQX010000004.1 Prevotella buccae strain SCHI0047.S.4 Contig_4_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 126098 49 100.0 27 ................................................. TCAAATATTATTATTATTTTCGTACTG 126022 49 95.9 27 ....C...........................................G TATCGTGCCGTTTGCAACAATCATATT 125946 49 95.9 28 ...............................................AG CTCTCCGTCACCGACCTCATCGTGTGGG 125869 49 98.0 27 ................................................C GTAATGAACCCTCCCTTTTCAGAAGGA 125793 49 98.0 28 ................................................A TTGGCGGGTGCGTTGCAATATTGCAACA 125716 49 95.9 27 ...............................................AG CTAAAAAATATACTGTTATGACACTCA 125640 49 100.0 28 ................................................. AACAAGCATAACGAGCGCATTAAGCAGC 125563 49 95.9 28 ...............................................AA GTGGTCGAGGGACTGGTGTTCCAAATTT 125486 49 98.0 28 ...............................................A. GTGCCAACCATACTCTTGTAAGTTCTTT 125409 49 95.9 28 ...............................................AA GGCCCGCTGCGGCGCATATCGACATCCT 125332 49 100.0 28 ................................................. TTATTGATATTGGAGTCTATCATGAGTT 125255 49 95.9 27 ...............................................GC TAAGGAAATTCATTCCGTCGCGCTTTG 125179 49 95.9 27 ...............................................AG AAAGTGGAGAAGATTAGGTGGAGAGCT 125103 49 98.0 27 ................................................C TTATCAATCAACTTCCTATATGTTGCA 125027 49 95.9 27 ...............................................AA GAATCCTACCATACCAATAGAGTTTTT 124951 49 95.9 28 ...............................................AA TAAGTTAGGGAGAATAACTCCCTAACCA 124874 49 98.0 28 ................................................G TTGATTTCAATACAAGGGTTTCATATGC 124797 49 95.9 27 ...............................................GC CAAAATCGGGTAAGGGCAAGCAAGGCA 124721 49 93.9 28 ................................A..............AA AATTAAAAACAATTACTTAGGCCGGGCA 124644 49 100.0 28 ................................................. CGCCCAGCGAGAGGTAGCCGTAGCCACG 124567 49 95.9 27 ...............................................CC GAAAGGTGGTGGATTATGTATTGTATG 124491 49 95.9 28 ...............................................CC GTCTTCTGGTCACCATTATAAGAGACCA 124414 49 98.0 0 ................................................C | ========== ====== ====== ====== ================================================= ============================ ================== 23 49 97.1 28 GTTGTGATTTGCTTGAAAATTTGTACCTTTGCGGTAGCAACAACAACTT # Left flank : ACAACGTGAGTATCGAGCCCTACGGTGGCGGCTATCTGGCCTGCGGCGTAGGCGGTAAAATCAAGGACTACGGCAAGCGTGCGGCCTTCAGCAGCTTTGAAGACGGCTACTTCAACCGCTTCGACGGTGGTCTGAAAATAGGTTGCGACGTGAGTTTCCAGATGCTCACCATAGGCATTGGCTACGACATAGGTCTCGCCAATGTGGGCCAAGATGTTTTCGACGACACTCGCACGGGCTGCTTCAACCTCAATGTGGGTGTGACATTCTAAGCGGCTATAGGTGCTGCTTCTTCATTCATATAGCCACGCCCCTTCCCACACAAACGACTCACCCACCGACACAACATAGAAAGGTGACTGTACCGAAGTTCAATACATCGGTACAGCCACCATCCTTTTGCTTAAAATATGAATGCGAAGATTTGGATTTATGGAATTATTCGTATATTTTTGAGCCAACAACAACTCAACACTCATATCACTCACCTTTTAGTAACA # Right flank : GATATCTATAATTCACTGAATTACAAATAGATACTTTGTTATTGCAAGAAAAATAAAATGACACCGCAAAGCAAAATCCCATTCGCAACGAATGGGATTTTCGCTTTCTATACAATACGTTCAGAATAGTTCCAGCTGTTGGAAAGGAGCATTAGGAAGAGTAGGCCTTTCCCCATAAAATAACTGTATGTTGGCAAATTGCTTGTCTGTAATACACAAAATTCCGACCTTTCCAAACTTCGGAAGATTATTGCGGATACGCTTGATATGCACTTCAGCATTCTCCATACTAGCGCAATGGCGCACGTAAATAGAAAACTGGAACATCGTGAATCCATCTTTAATCAGCACCTTACGGAAATCGATATAGGCCTTTTTCTCTTTCTTTGTATCCGTAGGCAAGTCAAAGAATACAAGAATCCACATAATTCTATATTCACTAAATCTGTCAAAACCAGACATAACAGGTTACATTTCGGGATAGCTAATATGCCGCACCT # Questionable array : NO Score: 4.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:-0.5, 7:-0.04, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATTTGTACCTTTGCGGTAGCAACAACAACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.70%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //