Array 1 605322-607337 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002370.1 Streptococcus thermophilus TH1436 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 605322 36 100.0 30 .................................... TAGGGATATGAAGCCCGAATTGTTGCAGCA 605388 36 100.0 30 .................................... AGAAGCACCTCTTGCGTTGATAAAAGTATT 605454 36 100.0 30 .................................... ATCTCTGACGCTACCATGTCATAGGTCATA 605520 36 100.0 30 .................................... AAAATGGCTTTGAAAATTATAACAGGAATA 605586 36 100.0 30 .................................... GAGTTGGATTAAAAACCACTACCATCACTT 605652 36 100.0 30 .................................... AGTCACCTCAAAGCTTAAAATTGGGCTGAA 605718 36 100.0 30 .................................... ATAAACGATGATGACTAGAGATGAAGCAGT 605784 36 100.0 30 .................................... ATCTTGTTATTTCTATATGTATCAAGATAA 605850 36 100.0 30 .................................... AAAGCACTTGACCGATATATCGAAAGCCAG 605916 36 100.0 30 .................................... AATATATTGAAATCAGATTGACCATCAGCA 605982 36 100.0 30 .................................... GACCTTTTGAAATTAATTGTTATCTACCTG 606048 36 100.0 30 .................................... TATGAAATAGGAAAGCAACTTGCTAAAGCT 606114 36 100.0 30 .................................... TGAAAACATTCGATAATGTCCACGTGAGAT 606180 36 100.0 30 .................................... GATATCTATGTGGAACTTATGACGGCTCGT 606246 36 100.0 30 .................................... CAAAGATAATCATTTATTTACTTATATCCA 606312 36 100.0 30 .................................... ATCGAACATGAGAGTATCGATGTTGAATTG 606378 36 100.0 30 .................................... AGTGTTATAATTTCATCATCACCGCAAGCA 606444 36 100.0 30 .................................... CTATACACAATATTTTCGCTATATAGTTTC 606510 36 100.0 31 .................................... TCAAAAGGTACGCATGAAACTTATCCCTGCT 606577 36 100.0 30 .................................... CATTAGTGACTTTTTTAGTCTCTACACCGT 606643 36 100.0 30 .................................... CCGTGTCGAGAAACTAAAATCAGAATGATA 606709 36 100.0 30 .................................... GCCGAATTAGCAATCAGGTTTTCACCACCA 606775 36 100.0 30 .................................... GCATCGTGGAAACAAACACAGTATGGGACG 606841 36 100.0 30 .................................... TGCTCACGCTCAAACTGTTCTTGTGCTTTA 606907 36 100.0 29 .................................... ACTTATCGATAAATATAATAGGTTTTTCT 606972 36 100.0 30 .................................... ACCAAACGGAGAGGAGTAATGATGAGTGGT 607038 36 100.0 30 .................................... TTTCATACACGAAAAGACAACAGATATCAA 607104 36 100.0 30 .................................... ACTTGCTAAAAACTTAACTAAACCCATGGA 607170 36 100.0 30 .................................... GATGTAACCCAAACCTTTTTTGAGTTCTAC 607236 36 100.0 30 .................................... AAATGACGGAACGTATAAAGGTCTAACCGT 607302 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTCGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1309967-1308215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002370.1 Streptococcus thermophilus TH1436 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1309966 36 100.0 30 .................................... TTATACTCACTACGGATCAATCGTGATTGT 1309900 36 100.0 30 .................................... CGAAATTCCTCAGTTTGCGATGGTTAAAAT 1309834 36 100.0 30 .................................... ATTATTAGCGGATTAAATCCCGCTTTCTAT 1309768 36 100.0 30 .................................... ATTTGGGGTATTTAGTTGCACTCCGTACAT 1309702 36 100.0 30 .................................... TTGACGTCTTCAGGGTTTCGATAGTCCAAG 1309636 36 100.0 30 .................................... AATTGTAAAATCGTGCTACGGGCGTTTTAT 1309570 36 100.0 30 .................................... TTTGGAAATTGCATTAGAATCAAGTTCTCT 1309504 36 97.2 30 ..........................A......... TAATGGTAATGACGGTATAGCTGGTAAGGA 1309438 36 100.0 30 .................................... AGCTTTTAGAGTGAGTCTGCTGTTGTACCA 1309372 36 100.0 30 .................................... TCAAATGCTAGAGAGCCGAGCGGCGCGTGA 1309306 36 100.0 30 .................................... TATTTCGAGCTCGCTCTAACAGTTTTTTGT 1309240 36 100.0 30 .................................... CACTAGGTTTTACAGCTTCTTCGACTGGTT 1309174 36 100.0 30 .................................... TAAAATTTTGGCGACAATTCAGCGTGAGTC 1309108 36 100.0 30 .................................... CTAAATCCGTTTCAATCCGTAGCCACACCT 1309042 36 100.0 30 .................................... AACAGTCACGTTTGACGTACCTAAAAGTTA 1308976 36 100.0 30 .................................... TACAGTTTCTTTACTAGTTGAAACGGTTAA 1308910 36 100.0 30 .................................... GATTCCGTTTTCCAAAAAATCAAATCCGAT 1308844 36 100.0 30 .................................... AGTCCAAAGGTATTTTCCTTTAACTAAAGT 1308778 36 100.0 30 .................................... CACTAGGTTTTACAGCTTCTTCGACTGGTT 1308712 36 100.0 30 .................................... TAAAATTTTGGCGACAATTCAGCGTGAGTC 1308646 36 100.0 30 .................................... GATGTATATCCAAACATGGATCATATCCGT 1308580 36 100.0 30 .................................... GCTATAATGACTTGCTTAGTATGTTTAGTT 1308514 36 100.0 30 .................................... AATCAGCAAATAACACTGACAACTATCCCA 1308448 36 100.0 30 .................................... CCAAAGAATGGACCATCTTAATGAGAATAT 1308382 36 100.0 30 .................................... TTGACAGAACTTTTGAAAGTATGGTTAGAA 1308316 36 100.0 30 .................................... ATCAAGGTTGTTGAAGTCGAATGCTATTGT 1308250 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTGTTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCACATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //