Array 1 295302-297798 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKKR01000003.1 Riemerella anatipestifer strain 17CS0503 NODE_3_length_308486_cov_560.229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================================================================== ================== 295302 35 68.6 30 ACAAT.A...A.AGCA................... ACCAATAAATACAGCTTATTTGCTCCTAAG 295367 35 97.1 32 ...............T................... CAACGGAATAAACATATTTTTCCGTTTGTGAG 295434 35 97.1 31 ...............T................... TAAAAAATAGAATAAGAAATATTCCTATCAG 295500 35 97.1 31 ...............G................... CATTTCAGAGTTGCAGATTAAATTGGTTGAG 295566 35 94.3 31 ......T........G................... TTTAGCTTCATTCTCTGTACCTTTTAGAATG 295632 35 97.1 31 ...............G................... GCCGTAGTTTGGAAGCCCTGAGCGTCCAAGG 295698 35 97.1 31 ...............G................... AGATTACCACTTTCATCTACAAAGTTCTTAG 295764 35 97.1 31 ...............T................... AAAGGCTTATCGCCTCTATATTTTCAAAATG 295830 35 97.1 31 ...............T................... TTAGATTTAATCATTGATAGCATCCCTGGTG 295896 35 97.1 31 ...............T................... TTCATTTATACTTCTAGGTAACTTAGTTAAG 295962 35 100.0 31 ................................... GGAAAATTGACAATATTTTTAGCCATACGGG 296028 35 100.0 31 ................................... AAAGGAACGCTACTCGTTGTAGGAAGCACAG 296094 35 100.0 31 ................................... TAAGATTTCTGGATTTTCGTATATGTTGCTG 296160 35 100.0 31 ................................... TGCTTTGTTCTTCTCCTTCTTTTGTTGCCGG 296226 35 100.0 31 ................................... AGCCACAGCGTTTGATGGTTCTACTGCTATG 296292 35 100.0 82 ................................... AGATCATGAAAACATTCAATTCTACCTTCCGTTGGGACTGCTCTCATTTTAGCTCACAGCTTTGTTGTAGTTTCAGCGGAGT 296409 35 74.3 82 .C.T..A...ATAGCA................... GAGTTAAACAATGGCGTATTATTCGTCCAAGTTGGGACTGCTCTCATTTTAGCTCACAGCTTCGTTGTATTTTCAGCGGAGT 296526 35 71.4 83 .C.T..A...GTAACA...........C....... TTTTTTCACGAGTATCTGCTAAGTCTGATTGTTGGGACTGCTCTCAGTTTAGCTCACAACTTTGTTGTCGTTTTCAGCAGAGT 296644 35 74.3 83 .C.T..A...ATAACA................... TTTATTTTGGTATTTTAAGTTGTTGTGAGTGTTGGGACTGCTCTCAGTTTAGCTCACAAGCTTTGTTGTTGTTTCAGCGGAGT 296762 35 71.4 84 .C.T..A...GTAGCA.............A..... ATATTAAGGCTACAGCACAAAACACAGAAAGTTGGGACTGCTCTCAGTTTAGCTCACAGCTTTGTTGTAAGTTTTCAGCGGAGT 296881 35 71.4 81 .C.T..A...GTAACA...........C....... CCGTTTAGTTTACCGTCATCTGCTAGGTCTGTTGGGACTACTCTCATTTTACTCACAGCTTCGTTATATTTTCAGCGGAGT 296997 35 77.1 81 .C.T..A.A..TAAG.................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGAGT A [297013] 297114 35 71.4 81 .C.T..A...GTAACA...........C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGAGT 297230 35 77.1 81 .C.T..A.A..TAAG.................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGAGT A [297246] 297347 35 71.4 81 .C.T..A...GTAACA...........C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGAGT 297463 35 77.1 81 .C.T..A.A..TAAG.................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGAGT A [297479] 297580 35 71.4 83 .C.T..A...GTAACA...........C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTACTCTCAGTTTAGCTCACAGCTTTGTTGTTATTTTCAGCGGAGT 297698 35 71.4 31 .C.T..A.A.ATAGCA................... TTTTTCAAATCTTTCGATAGCTTCAAGTTCG 297764 34 82.9 0 ..........-TCTCA................... | C [297782] ========== ====== ====== ====== =================================== ==================================================================================== ================== 29 35 86.3 53 TTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Left flank : AGAGCTTAAGGGCAACATTGAACGCCAAAAGTACGAGGATATACTCCATGCCCATAAGCAGATGTACCGTCTGCTGGCGTATATGACCGACCAAGACAACCCCAAAAACCTCTTAAAATGGGAAGTTCCCAAAGGGCAAAAGGATAAAATTCATTATATTAACCGAGCCAATGCCCAAGCCTTTCTAAGGGAGCTCCCAGAACTATTTTATGGGGAGGGCTGTGGGCTCTTCTTATCTGAGGAAGTCACCAAAAAGTTTTTTGAGTACCGTAGTATCGTTCATAAGCTCCTACTTGCAGAGCAAAACAGCACCGAGGCGGAGTTCCGACTAAAAAACGAAGAGGCGGCTACCAGAATGAAGGTGCTGCATCATAAGTTGAGCCAAAGCATTAGGCAATGCCTAAAAATAGAACAACGCGATTTAAAAGCGTTGTAAAGAAAAGCGTTCTTTGAAACATCGAGATAAAACAAGCACCCAAAAAAGACAATACCCTATCATA # Right flank : CACCTAAGAGCATAAAAAAATCCCTGCTCTGTATGGTACAGAGCAGGGATTTTTGCTTTCTACTTATTCTATTACAGAAAACCCCTCACTGCCTTAATACAGACGAAGTCGGTTCCCTCGTACGAGGGAAGGTTCTTCTCCTTACCGAGAGAAGAGCCTTCGCCTTAGGCAGTGAAGTAGCTTCCTCTTATAAAGCGACCGCCCTTCCTTATTACTAAGGAAGGGCGGTCGTTATTTAGAAGTGCCAAAAACACACTACACAATAGTAATAGGCGTGCTTAGTGTTTCGGTGCGGGGTTCTTTCAGTAAGGTAGTGCCTTTACTGCTTTGCGTGGTGATGCTGAGCTCATAATTACCTGCCTCTAAATCCGAAGGCACAAGGATAAGCACCCTTGACGGCTCGTTGATTACGATACTATCTTTTGCCAACTTGACCTCATTTTGGGTGTCTAGGTTTTTAAAAACGATGCCGTTTTTTGGATTATCGCCGTCTATTTTAA # Questionable array : NO Score: 3.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.32, 5:0, 6:0.25, 7:-1.56, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-106] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 30844-33893 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKKR01000006.1 Riemerella anatipestifer strain 17CS0503 NODE_6_length_186757_cov_617.407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 30844 47 100.0 30 ............................................... GCGGGCTTCGGGTTTTGAACTTCTAAATAC 30921 47 100.0 30 ............................................... TTTCCACCTGCCACTCCGTAGTGCGGCATT 30998 47 100.0 30 ............................................... TAGTTGGTAAGTATCATTTTAAAATATTTT 31075 47 100.0 30 ............................................... CTATCATTCAAATATTGTTTTTCTAAATTC 31152 47 100.0 30 ............................................... GATGTAGAGCTAAAAATAAATAATGAAAAA 31229 47 100.0 30 ............................................... TATTGCAAGAAAGATAAGAAAAGGAACATC 31306 47 100.0 30 ............................................... TGCTCGTGCTTTTTTCAGCTTATTGCGGAT 31383 47 100.0 30 ............................................... AAAGAAGCAAAAGAAAAATCACAACAACAA 31460 47 100.0 30 ............................................... CTGTAACAAGAATTAAAACCTATACTTATG 31537 47 100.0 30 ............................................... TCGCTATATCTGCTGCATAAGAATTAGAGA 31614 47 100.0 30 ............................................... TCGTAAGCCTGCTTTCCGCTCTTATCTTTT 31691 47 100.0 30 ............................................... CGGAGCGACCCCGGGGGGCAAAGGGTAGGA 31768 47 100.0 30 ............................................... CACAGAGGCTTACATTAAAATAATCCAAAT 31845 47 100.0 30 ............................................... TGATTATATTTGTATAAATGTTGTATGTAT 31922 47 100.0 30 ............................................... AATAGATACATATTTAACTATATTTTTTCT 31999 47 100.0 30 ............................................... CAAAGTCCCTCACTTATAGGGTATCCATTA 32076 47 100.0 30 ............................................... TTTCAGATAGTCTATAATATTACCTTTTCC 32153 47 100.0 30 ............................................... CGTCAAGTAATACGATAGCTTCCTTTGGCT 32230 47 100.0 30 ............................................... TGCAAGTTGAACGCCTATATCAGAACTATG 32307 47 100.0 30 ............................................... TAATATCCGCTCTGCTATTTTCGCCTATAA 32384 47 100.0 30 ............................................... TAGGAGGAAGAGTAAAATTTGAACGATTTA 32461 47 100.0 30 ............................................... ATTATATTTATGAACTCTTTAGCCGAAAAT 32538 47 100.0 30 ............................................... ATCGGAAATCTAAGAAAATCAACACCTAAA 32615 47 100.0 30 ............................................... TTGTTTCAACCGTAGATAATAACTTACTGA 32692 47 100.0 30 ............................................... AAAAGGGAAATAGATTCTCTTAAAATGATG 32769 47 100.0 30 ............................................... CCGTCCGTTTCAAATAGCTCAAAGATACGA 32846 47 100.0 30 ............................................... TATTGTTGCTACAAGATGTAATAGAATACT 32923 47 100.0 30 ............................................... AGTAAGGACTAAAGGAAGTCATCATCACTT 33000 47 100.0 30 ............................................... AGAACGCAGTTACTAGACTTTGCGGATAAC 33077 47 100.0 30 ............................................... CTACAAGCATTACAGGGTATTACAGAAAAA 33154 47 100.0 30 ............................................... CATTAAACACGAATTAAACACGCAAAAAAT 33231 47 100.0 30 ............................................... TACACCGAACAAACTATAAATAAACATTTA 33308 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 33385 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 33462 47 95.7 30 ........T...............G...................... TAAAAGGTTATATACTAATGACAAAAGCAA 33539 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 33616 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 33693 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 33770 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 33847 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 40 47 99.2 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //