Array 1 361807-363421 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBF01000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain 2011K-0033 NODE_1_length_565280_cov_42.0289, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361807 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361868 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361929 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361990 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 362051 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 362112 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362173 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362234 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362295 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362356 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362417 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362478 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362539 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362600 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362661 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362722 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362783 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362844 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362906 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362967 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 363028 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 363089 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363150 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363211 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363272 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363333 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363394 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379554-381030 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBF01000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain 2011K-0033 NODE_1_length_565280_cov_42.0289, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 379554 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379615 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379677 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379738 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379799 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379860 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379921 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 379982 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380043 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 380104 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 380165 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 380226 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 380287 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380349 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 380410 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [380452] 380452 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380513 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380574 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380635 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380696 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380757 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380818 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380879 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380940 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381001 29 96.6 0 A............................ | A [381027] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //