Array 1 11494-12619 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRW01000089.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3965 NODE_89_length_16828_cov_2.43243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11494 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 11555 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 11616 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 11677 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 11738 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 11799 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 11860 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 11921 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 11982 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 12043 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 12104 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 12165 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 12226 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 12287 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 12348 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 12409 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 12470 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 12531 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 12592 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12012-13446 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRW01000102.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3965 NODE_102_length_13483_cov_2.34746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12012 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 12073 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 12134 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 12195 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 12256 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 12317 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 12378 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 12439 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 12500 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 12561 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 12622 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 12683 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 12745 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 12807 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 12868 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 12929 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 12990 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 13051 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 13112 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 13173 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 13235 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 13296 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 13357 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 13418 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : AACCCTCAGAAAATAATCCAGACGTTACCGAAGAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRW01000153.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3965 NODE_153_length_860_cov_2.15058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 112 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 173 29 93.1 0 A..............A............. | A [200] ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGATCTGTGATTGGTCACCAGGTTGGAAAATAATCCAGACGTTACCGAAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //