Array 1 37356-37660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKZ01000010.1 Enterococcus quebecensis strain DSM 23327 Scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 37356 34 100.0 34 .................................. GACAATAACTGACCCAACCGAATTAAGTGAGTTA 37424 34 100.0 34 .................................. AATTAAATTTTAATCTATATTTTTTCATCGAAAT 37492 34 100.0 33 .................................. TGATGACGTGATAATGAATTTTTTGTTGGCTTT 37559 34 97.1 34 .................................A GTCAAACATATGCCACAAATATAATGTTCCCAAA 37627 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================== ================== 5 34 99.4 34 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT # Left flank : ATGGCTATCCGCCATTTTTATGGAAGTAGGTGCAATGCATGTTAGTACTGATTACTTACGATGTAGCAACTAGCTCGAAAAACGGAACACGTCGTTTGAGAAAAGTAGCTAAAAAGTGTCAAGATTACGGGCAACGTGTTCAAAATTCAGTTTTCGAATGTATAGTTGATGCTACGGAACTGACAAGATTGAAGAAAGAATTAATAGATTTAATTGACGAAGATGTAGATAGTCTGCGTATTTATCGGTTAGGAAATAACTATCAAAATAAAGTAGAGCATATTGGGGCGAAAGAAAGTTTTGATGTAGAAGCTCCTTTGATATTTTAAGTAGTCCAATTTGGTGCGAACCCGAAGTGAACATAAAATCACTGGGGGATTCGCACCAAAAAATAATGATTTTTCGGGCCTAAAACACCGTTTTTCTCATTATAATTTAATTTTTTCGTTCTTTTTTGTGAAATTGTTGAAAATATGTCGTATATATTTGCCGGTTTCACG # Right flank : TTTTGAAACATAGTACAAGTTGGGATGATTTTCGTCTAGCTCTGTATAGAGAGTTAGACTTTAATAAAAAATGCAAAATAAAATCTCTAAAAAGATCATATGATATATATATAAGACTGTTTAGGGTCAGTAAAACTATGTAAAAGAGTGACTAGGATGTATAATCCTAATCACTCTTTTCGTTATATATTTGATATGTTTTAGAGGGAAGCGTTGTAGATATTAAGTTTGTTTTATATACGATCAGAATAAAAATCATGGAATTATATCCTTAAATAACAATTCGTGTTAAATCAGACGATACAAGAAATTCTTAATAAAGATAAGTTTATCAGAAGAATACGATTATTATTTTTTGTTATTTATTTATTTTTTCTTGTTTTATTTACTAACAAGAAATATGTTTAGAATACCTATTGTTTGTTTGATCCTTAAGTATGATATAACGTTTATTTTAGTTTGTCAACATTATTTATTTATATATTTTATTTTCTAATTAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 108379-109023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKZ01000009.1 Enterococcus quebecensis strain DSM 23327 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 108379 34 100.0 35 .................................. AATTTAAAATTGATTTAAAATTATCGTCCATTTTT 108448 34 100.0 34 .................................. CATTTTTGAGGAGATATTAGTCAAGGAATTAGGA 108516 34 100.0 34 .................................. CATTTTTGAGGAGATATTAGTCAAGGAATTAGGA 108584 34 100.0 34 .................................. CATTTTTGAGGAGATATTAGTCAAGGAATTAGGA 108652 34 100.0 34 .................................. CATTTTTGAGGAGATATTAGTCAAGGAATTAGGA 108720 34 100.0 34 .................................. CATTTTTGAGGAGATATTAGTCAAGGAATTAGGA 108788 34 100.0 34 .................................. GATTCTTCACGTTTCACATAATTTGCAAACCCGC 108856 34 100.0 33 .................................. AACCACTCCTACATCCTCAATTGATTTTTGGAT 108923 34 100.0 33 .................................. ATGGCACTTTTTCCCATGCCCTTGATTTTTTTA 108990 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================== ================== 10 34 100.0 34 GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Left flank : TGGTGGAGCAGACATCTTACCATTATTCCGCTTAAACAAGCGTCAAGGGAAAGCTTTACTGAAAAAATTAGGTGCCCCAGCTGAATTGTATACAAAGATTCCAACCGCTGATTTAGAAGATGATAAACCATTAGTAGCAGATGAAGTAGCTCTTGGCGTAACTTATGATGACATTGATGATTATGTTGAAGGAAAAGAAGTCTCAAATGAAGCAAAAGAAACAATTGAGTCTTGGTATAAAAAAACACAACATAAAAGACATATGCCTATTTCGTTTTTTGATGATTTTTGGAAGTAAGAGCTTATAAAAAGAAAGTTAAATGATTTCTTGGTGCGAACCCCAAGTGCCCATGAAATCACTGGGAGATTCGCACCAGATTTTGGGCTGAAAAGAGCTAAAATAGTTCTTTTTTCTCATTTTATTTTAATGTTTTTGCTGATTTGTGTGGAAAAAATAGTAGGTTTTGCTGATTTTAGTCAGATAATACTACTTTTTCACA # Right flank : TAACTTGATCAAATGTCACTGGTTTTACTTTAGTGTCTCACTCTGTTATGCAGTGAGTCATAAATTAACCTATCAAAATCAAATCTAAAAAAAAGACTAAACTAGTCTTTTTTTTACGTCTAATTTCAATTAAAAATACCTTCATTTTGCTCAAATGGTTAAAAAAGTGTAAACTTGTTATCAAACATAAGTAAGAAAATGTTTTACAATCACTGTAGTGATACCTATATAAGAAGGTGAATGGAAAATGAAAAAATTATTTAGGAAAAAAAGAGACGTTGACAACGAAGTGTTTCTTTCATCTGATGACACAAAGGAAACGATAGATCATAATAGCATACGAATCCCAGACAATATTAAAGGTCTGACAAATCAAGAAGTAGAAGAACTTTATGCACAAGGTAAATACAATATGGAGGTTGAGGATTTATCTAGAACGACGAAACAAATTATTCTCGATAATTCATTGACACTGTTCAATTTTATCAACTTATTTTTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: F [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15101-15544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKZ01000003.1 Enterococcus quebecensis strain DSM 23327 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 15101 34 100.0 35 .................................. TACTGTCGGCAACCTTGCCCACTAATGTGGATTGT 15170 34 100.0 34 .................................. CCAGACCCCCCCTACTAAAAGGGGGGTCTACAAT 15238 34 100.0 35 .................................. ATGTCTGACGTCATATATATGGAATATAACAATGA 15307 34 100.0 34 .................................. TACCTTCTATAGCGGGATTTTCTTTCATCTCCCT 15375 34 97.1 32 .................................T AATATCACGAATTGAAAGGAAAATGTTTAGTG 15441 34 100.0 36 .................................. AATTTTAGTTTTAAAAGAAAGAGTCACGTCAAAGCT 15511 34 76.5 0 ........T...TC...C.....AAC..G..... | ========== ====== ====== ====== ================================== ==================================== ================== 7 34 96.2 34 GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA # Left flank : AGAGATTTAATTTTTTACAAAAAAACTGGGCAAAGGAAGATCAGCAGATGTCCTTAAATTTTGAAGAACAGAGCATGGTCGCAGAAGATAATTCAGATATTTTTGAAGAATTTCCCCAAGTAGTTTGGCAAAAGCGGACATTAGGGGAAGTTACTCACATTTTTAGTCATTTAAAATGGCATATTTTAGTGTTTTATGGACGTCAAACTGGACTAATGTCTATAGAGAAAAATCAAACTTGGGCAACAAAAGAAAATTTTTCAAATTATGTTTTTCCAAAACCTCAGCAAAAAATGGTAGAACTTTATAATCAAGACTTTAGACCGAAAGATTAACTTTTTGGTGCGAACCCCAAGTGCCCATAAAATCCCTAGGGGATTCGCACCAGAATTTTGATGATTTTAGCGTGAAAAGAGGCTTTTTCTCATTTTAATTTAATGTTATACTGGTTCTATAGGTGAAATGGTGAAGATATGTCATGTATTTTTATCAATTTCACA # Right flank : AAACATACCACCAGCTACTACTTTCTATTTAAAAAACGAGCTATTTCGGATTCTCTATCTTCTTCAAAATCTCCCCATCTCAACCTCTAAATAGCAAAATTAAACTATTTATTCCAATAGATATTTCTCATTCCTATAAGAAACCAAACTCCGTAGTATGCAAAGTTGAAAATTATGATATAATTGTATTGATATCGGTGTAATGAACACCCAAACGAAGAGTAATCAGCTTTTATAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATCCAAAGTTACAAACACGACGGACATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACAAGTGAGTATTCCTTGATTGGCGTGAACGATCATACTTTGGTGACAGAGTCTGATGGGCGTCGTTGGGTGACTCGAGAACCTGCTATTGTTTATTTTCATAAAAAATACTGGTTCAACATAATAGCGATGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.71%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 73848-74014 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKZ01000003.1 Enterococcus quebecensis strain DSM 23327 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 73848 33 100.0 33 ................................. TGTTATCGGCGAAGGAAACACTTATGCTCAGAC 73914 33 100.0 35 ................................. CAATAGAACTCGTCAATTACGAGTACTGGGACACT 73982 33 75.8 0 ......................CTTT..ATTT. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 91.9 34 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : GCAGTGATCATGACGAATGCGCAAGCTAGTGAAAAAACAATGACCATCAGTGCGGTACATGCAGGTAAAGTATTTGTTGACATTTTAGGCAATCATCCAACCAAAGTTGTGTTGGATGAAACTGGTGCAGGAACATTTCCTGTGAATGGTGGAGAAGTTTCTGTCTATGTAAATGAAGAAATTGTAGATCAATTGTGTAAATCGTTGGATGAATAGGGTTTTAAAGAGAAGGTACTAGAGTATTTGGATTATGATTATATAAAAATAGTACGTGACTTCTATTGGAAGAATAATTATACTAAGTATAATAGATAATAAGCTGTAAAATGTATGGATTTTTGGTGCGAACCATAAGTGCACACGGAATCACTGGGGGATTCGCACCAGATTTGAGAGACGAATAGAGGTAAAATTCTATTTTCCCTCATTGTTTTCTCATTTTGCGGAAGGTTTAATGTGGAGAAGTGGCAAATATGTACATAGTTTGTTACTTTTTCACG # Right flank : TCCTAAAAAATCGATTCAGAAAAAATCAAATCTAATTCTACAACTACATAAAATACTAACTCAATAACAACAAAATGATCGTTTTGCAAATCCTGTCATTATTAAAGAATTTTCGCTTTATAATCTAGCTACATACATTAAACATTTCGATAATAACCTGAAAAAAATCATGATAACAGGTACCTTTAAAATTTTTTGTATCTTACTTACTCAAGGTTTGTTCAATCTGTTCAGCTTTTGTGTTTTTTTTGGTATAATAGATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAATCCAAGACAAAAAGAAGCCGTTCTACATACAGAAGGGCCTTTATTAGTTATGGCAGGTGCAGGTAGTGGCAAAACGAGAGTCTTGACCCACCGTATTGCCTATTTAATTGAAGAAAAAGACGTCAATCCATGGAATATTTTGGCGATTACTTTTACCAATAAGGCTGCTAAAG # Questionable array : NO Score: 7.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //