Array 1 1333943-1334367 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP013854.1 Pseudonocardia sp. HH130630-07 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                                                                                                           	Insertion/Deletion
==========	======	======	======	==============================	==========================================================================================================================	==================
   1333943	    30	 100.0	    31	..............................	CGCGGCCAGGCCGACGTTGCCGATCAGGGCG                                                                                           	
   1334004	    30	  96.7	    31	............T.................	GCCCGTACAGCGTGTGTACGAGGAGCGGCAC                                                                                           	
   1334065	    30	  83.3	    30	............T..........AT...AG	GATCGAGTGGTCGAGCCCGCGCAGCGTGGC                                                                                            	
   1334125	    30	 100.0	    31	..............................	GGTTGATCAAGCGGTACGGGGCCGTCGCGCA                                                                                           	
   1334186	    30	  93.3	   122	...........G.................G	TCGCGATTCTCGCGGTTGGTCCTGCGTCGGTGTGGTCCCCCGCCCGCGACGACCTCATACCCGCCGGTGATCACGAGTCGGGAAGGAAACCGGCCACATCTGGCCGCACCGCTTCCCGATCC	
   1334338	    30	  73.3	     0	.T.A..A....G.........TG.....GG	|                                                                                                                         	
==========	======	======	======	==============================	==========================================================================================================================	==================
         6	    30	  91.1	    49	GCGGTCCCCGCACACGCGGGGGTGGTCCCC	                                                                                                                          	       

# Left flank :   CGGGGCCGGTCCGGGCTGCTGCGGCACCTCCTGGGTGGTGCCGCGGGCCGGTGGTACCCGGGCCGGGAACGTCACCGATGCGCGCGGGGCCGTCGCCACGCCGGGCAGGTGCCGATCATCGCCCGGCGCCGGACGCTCCCGCACGGTCCGGCATCCGCACGGTCCGGCCGCATCCGCACGGTGTTCAGGGACCCTCACGGGACCGGGCCCCGAGCCAGGGCTCGGAGTCCGTGCGGAGCCCGGTACCCGGTGCGGGACGCCCGATCTTCGGCTGTCGCCGTACCCGGTTCCCGGTCTCGGGGGTTCGCGTTTCGAGCGAGGCCATCGACCTCATGTGGGAGCGGCGACCTCCCGGTGCCACGTTCCGCGGAACGGGCCCGTGCTCCCGGTTCGGTGCGCTGTCACTCGTGGACCTTGTGCGGCCCGTGTCCGACGTACTGCCGGGTCGACGTTCATGCCAGGATGCTCGGCGGACCCTGCATCGTCGCTGGTCAGGAAGT
# Right flank :  GGCTCCTGCAACCGGCGGAGCAGGCGATCGGATGGTCCCGCGGGCGCAGGTACCACCCCCGAACGACCCGCGGGCGGGACCGGGCACGGATCACGCCCCCGTCCCGGACGAACTGCGCGTCCGCACGGGTAACCGGATCCCGCACGAGACCGGGCCTCGTGCGGGATCCGGAACACCGTGCGGGATCCCGGAACGCCCGGGGCCGGGGTGCGGACACGCGGCGGCGTCGACGAGCAGGTCCGGCACCCCCAGGACGGGCGTCAGGGGTCAGCTGCTCGCGCGGGCCGAGGCGCCGCCGGGGTCCTGCGGGCGACCGGCCAGGGCCGCGCCGATGGCCTGCACCGTGGCGACCGGGCGCCGGATCGGGTCCGACGGATCCAGCGTGACCGTGTGCCAGCCGTGGCGCCGCAGCACCGCACGCCGCCACGCGGCACCGCAGGCGTCCGGGCCGGAGCCACCGCCCCGGATCTCGACGGCCACCCGTTCCCGAGGGAACGCCA

# Questionable array : NO	 Score: 3.65
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.84, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCGGTCCCCGCACACGCGGGGGTGGTCCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.00,-12.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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