Array 1 7081-8259 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFDH01000105.1 Bacillus thuringiensis serovar kim strain BGSC 4BP1 4BP1_contig000105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================== ================== 7081 32 100.0 35 ................................ ACGATCGCTTTTGTAGCAAACACCCACGAAATGAA 7148 32 100.0 34 ................................ AAAAGTAGCGGTAGGTTTTACAGCAACAGATTTA 7214 32 100.0 34 ................................ CTAACTTATAAGGCATAGGTGCAATAAAGGTAAC 7280 32 100.0 34 ................................ AATTACGTTGATTCGCTTGATATCAGATGTTCTT 7346 32 100.0 34 ................................ ACTCACGGATACGTAATTATAAGTGGGATATAGA 7412 32 100.0 34 ................................ TCTAAAAAGAAAGCATTAGCAGCAGAAGAAGGAT 7478 32 100.0 34 ................................ AGTTGAGTGAATTAATGCTCGTGAGTGATTGTAC 7544 32 93.8 34 ...........A......A............. TGTATGATTACCTTAGCAAATTCAACGATAAGTT 7610 32 93.8 34 ...........A.......T............ TTATCTTTATCTACTGCAACTACACCAAAATTAT 7676 32 96.9 34 ...........A.................... CTAAAATTAGATTCCATGACTTACTACATACCCA 7742 32 93.8 34 ...........A.A.................. CACATTAAGAATTTTGGAACAAAGATTGTAAAGC 7808 32 93.8 33 .........C..............T....... ACTCCTATTCATTTTTCAAAGATCGTGCTTCAA 7873 32 90.6 33 ...A.....C.........T............ TACACAGACAAAGAGGGCAACCCTACTCGCCTT 7938 31 96.9 34 ..............-................. CCCTGCTGATGCAACATCGCTACCTACATTTTGT 8003 32 93.8 35 .........C..........A........... TCAGACGGCTTGTCTTTTTCCGTAGGCTTATCTGT 8070 31 87.5 34 ......T.-..........TA........... TACCTAGGGTTTATATTTATCTGGAAAGCTCATA 8135 32 96.9 62 .....................A.......... GGGGATATGCCAGGCGTTTGGCAAAGTGTTATTGGTTTATCAGGAGTCATTGACTTGTCATG 8229 31 87.5 0 .........C.-.A......C........... | ========== ====== ====== ====== ================================ ============================================================== ================== 18 32 95.8 36 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGGATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTGGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGAATCAATATATTAAGGGTATTATGAAACTATACATTTTGGTTATTCAATTAGGTAATAGCTATGAAAATAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGCCCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTTGAATTCTCATGCTTTATAATGGTGATTTATGATTTTTATACAAATTACTTTATTAAATAAAAACATTTGTATATTTTTGGATAAAACTAACGTATTTTTGGTTGATTTCGAACACAAATCGGT # Right flank : TTAGCAATGCTCTGGCTTTAAAACGCTCTGCAGATGTAGATACTCAACTGGAAGTATCTATATCTGTAGTATCTAACACACATGTTATAAACATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGGCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATCGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATATCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCT # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16618-17377 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFDH01000105.1 Bacillus thuringiensis serovar kim strain BGSC 4BP1 4BP1_contig000105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 16618 32 100.0 35 ................................ AACTTGTCGTTTAGTTTGAGTCCCTGTAGTTCCGC 16685 32 100.0 33 ................................ TCGAAATGGTTTCCGAGCTTGGTTAGAATTAGG 16750 32 100.0 34 ................................ ATATACGCCTTGTGTATCACCTGTTAGACTCGAC 16816 32 100.0 34 ................................ CATTCCACCCCATTGTTTGTCTTGGACACCTTTT 16882 32 100.0 34 ................................ AATTAAATCATCAATTTCGTCATCTAAAGCATTA 16948 32 100.0 35 ................................ GCTGATGTACTCGCAATTATCCCTTGTGACGTATG 17015 32 100.0 34 ................................ AGGGAAGATGGCTGAATACTATGAGTTACCACCT 17081 32 100.0 34 ................................ TATTATGTTAGCTGAAACGATGGCTAAAGAAATA 17147 32 96.9 34 ...........................A.... GTCCAGCATGTGCCTTGGCAAACTCAGGAGGAAC 17213 32 96.9 35 ...........C.................... TTAGATTATTTCAATGCAAAAATAGAAGTAAACAA 17280 32 93.8 34 ...................T...A........ ATTAGACGAGATATATCCACAGAAGAAGAATTAC 17346 32 87.5 0 .......T............C.AA........ | ========== ====== ====== ====== ================================ =================================== ================== 12 32 97.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACAACTAACAGTGTTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAGATGGAATTAATTAAAATTATTAACGAAGATGAGGATAGTCTTAGATTTTATCAGTTAGGTAATAACTATAAAAATAGGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTCGTGCATTCGCACCTGAATTTTCATAATTTATGAGCGAAGTTTAATATTTTTTATACAAATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAGTGTATTTTTGTATGGTTTTAAACAAAAATCGCT # Right flank : TGAAATTACTTGCTGCCTTATCTAGATTACTTTCTTCGCATCTCAGGTGTGTGGAGTAAGACTGATAAAATAATTGATAGTAATTTAGTGCCTCTGTTGGAGAAAGGGGACCTGTTTCAATTCATAAAGCAACGAATGTTGATCCAATTGACATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCATGGGAAGGATAAAGTTTTAGATACGATGGGGATGAAGCATCGTGTTGATTTCGCAGTCTATGTTTGTTGGTGGGATCATCATTCAAAACCTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACAAAAAACAATCAATGATTATACTGTCTTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTAAAGGAATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAAGATATACCCTATCAATTTATTAAAGGAAAGTCGCATT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 19341-19769 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFDH01000105.1 Bacillus thuringiensis serovar kim strain BGSC 4BP1 4BP1_contig000105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19341 32 78.1 35 ....T....CT.G.....A..T.A........ CAGGCTGCCGCTTAACGGTGTGGCTGGAGCGTTTA 19408 32 90.6 33 ..........TC..G................. GATAAAGGGTTTGCAATCATTAAAGATATTGTT 19473 32 90.6 33 ..........G........A.T.......... TATAAAAAAGAAGTATGTTGATTTAGTTAAGCG 19538 32 84.4 35 .........C..TA..A....T.......... CGTAGTAGCACATATTTAAAACGCATATACGGACA 19605 32 90.6 34 ......T..........A...T.......... TAACAGTCATTTGCTTATGTGCATCTCAATTTAG 19671 32 100.0 35 ................................ CGCTAGCGCTACAAGTCTAAAGGAATTGTATGGGC 19738 32 71.9 0 T..AT....CTC.......T.T.........G | ========== ====== ====== ====== ================================ =================================== ================== 7 32 86.6 34 GTCGCACCTTATATAGGTGCGAGGATTGAAAT # Left flank : GATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAATACACAGTTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAAATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAATAATTGATGACTATAACATTTCGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGACCGCAATGAAGAAAACATTAGAATGATTGAAGGAAAGCGTATTTATTAAAAAGTTAATCAACCATTTATTAAAGAAAA # Right flank : GTGGTAAAACACTTATAGTATTTAATTATACCTTAACGCATTACCCAGATACTTTTTGACTATCACCCTTCACAAGCTTAAGGAAGCAGGATTCTTTTAGGTAAAGCGTTAACTTTAATTAAAACTTCTTGTAATATATAACATTATTATATAATATATAGGTATATTGTTAGTTTATTTGATTCCGTTTATTCCCACACCTTTTTTGTGTTGTGGTTGAGTTGTAGAAGCAAGTTGCGTCTTGTTTCAATTGTGAAAGGGCTTCTTTGAGCCGATTAGTGTATATATAGTTTTTTTTGCTATGCACATTTTTAATCGACTTGAAGAAGCCCTTTTTGTGTTGTTTTCAAGTTCGCAGGCGGGGTTATTTATGATTAATAAAATAACAAATTAGAGGAGATATGAAAATGAATAAAGATTGTAGACACTTAAAATTAGTACCAACAGTAGAGGAAAATAAAATACGAATGGAAAATAAGCAGAATTCATATGCATCATCA # Questionable array : NO Score: 6.43 # Score Detail : 1:0, 2:3, 3:3, 4:0.33, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGAGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //