Array 1 63468-62583 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTB01000012.1 Escherichia coli strain MOD1-EC5086 MOD1-EC5086_12_length_133569_cov_57.0691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 63467 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 63406 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 63345 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 63284 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 63223 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 63162 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 63101 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 63040 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 62979 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 62918 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 62857 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 62794 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 62733 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 62672 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 62611 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90538-89167 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTB01000012.1 Escherichia coli strain MOD1-EC5086 MOD1-EC5086_12_length_133569_cov_57.0691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90537 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 90476 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 90415 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 90354 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 90293 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 90232 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 90171 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 90110 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 90049 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 89988 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 89927 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 89866 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 89805 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 89744 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 89683 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 89622 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 89561 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 89500 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 89439 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 89378 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 89317 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 89256 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 89195 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //