Array 1 1772719-1771636 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042162.1 Campylobacter fetus subsp. fetus strain INIA/17144 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1772718 30 100.0 36 .............................. TAAATTGCTCTGTAAGACCAGTTATATTTCCACTAT 1772652 30 100.0 36 .............................. TAAATTGCTCTGTAAGACCAGTTATATTTCCACTAT 1772586 30 100.0 37 .............................. ATCGTACCCAAACAATTAAACGAAATATATTTCGTTT 1772519 30 100.0 36 .............................. TGCTGAATTAATAACAGTTATGAAGACGTTGCTTAA 1772453 30 100.0 36 .............................. TCATCTTTTGCGTACCTTTCATAATTGAATGCTATA 1772387 30 100.0 35 .............................. TGTATATCGCCAAATTTATTCCAATTAGTAACTCC 1772322 30 100.0 35 .............................. TGTATATCGCCAAATTTATTCCAATTAGTAACTCC 1772257 30 100.0 35 .............................. ATGGATGGGAAAAAAGAGTTAAATAAAAATGTTAA 1772192 30 100.0 36 .............................. TACCCAAGCGCAAGACGTGCAGCTGTATTTGTAGCG 1772126 30 100.0 36 .............................. TTTTAACACAAAATTGTCTGTAGCAATATATCTAAT 1772060 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCGAATTTC 1771994 30 100.0 34 .............................. TTGTTCTGGATATTTTAGTATTGCCTGCCAATTG 1771930 30 100.0 36 .............................. GACTGCGAAGGAGACTTTGTAGTGGAATTTGAAATA 1771864 30 100.0 36 .............................. ACCTCTGCACCTACTTTAAACATAAAGTTTTTAAAA 1771798 30 100.0 37 .............................. ATAAACTATCGTTTTAACCTTAAAATGTCACGTAATT 1771731 30 100.0 36 .............................. TTTTCTACTTTATATTCTACCCCTAAATAAAAGAAA 1771665 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : GGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGTCTGTAGCAATATATTTAATATTTGCATTATATCTGCAAACTTTTAAAATAAACTTTAAAAAGGATTAAAATGATAAAAAAATTAACAGATAAACGGCTATCTGAAATAACAAAAATCCCTTGCGGGACGATAGCCGGTTGGAAGAGGTCTGATGGTTACAAAAAAGATATATATCTTTTCTTTAAAAATTTAGACCCGGAATTCTTAATAGAGAATTTTGGAGCCAAAACTCCTATAATCCCTTTGTTAGATAAAGAAGTAGTAGGCGCAATAGGCATTTCGCCAGGCACCCTGTATGGCTGGAAAAATGGGAAGGGGCATAGAAAAAAGCTATATGATTTTATAGCGCAATTTAGCGCAAAAGAGATTTTAGATATCTGTGCAAAAGAAAAAGATAGCATAAATGATAAAACGCTCTCAAAAATAACTAAAATTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1784753-1784327 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042162.1 Campylobacter fetus subsp. fetus strain INIA/17144 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1784752 30 100.0 36 .............................. ACATTTTCAATTTTGTATTTTTTAGCTTCATACAAA 1784686 30 100.0 36 .............................. CCGGATTCTACTTTGATAAAAAAGGCCTTGGATGCT 1784620 30 100.0 36 .............................. TCGCTTTGTAAAAACTCTTTTTGATAGCCGTATAGA 1784554 30 100.0 35 .............................. AAGCAACAAACATGGCTTATGAGCGTGATACTACC 1784489 30 100.0 36 .............................. CAGACTGTTAGATAGTGCAAGGGAGCTAGGTCTAAA 1784423 30 100.0 37 .............................. AACTTGTTATATTCGCTAAAATTATACAAACGGTACA 1784356 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AGGAGCTATCGTAATTTTCTTCTTTTTAGATTGTAATAAAATATCTATATCCATGGAAAATTAGGAAAAATAGTAAATGAGGGTAGTGCGGACGCCCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : AAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTGCTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGTGACCACATTATAAGTCAGGCTCAAAACATAGCTAGAGTAAATCAGTCTAGTAAATACGGAGTAAAGCATTACAAAGTATTAGCTAGGATAGATAGCCGTACAAGCGATATCTGTAGAAGTATGAATGGACGTATAATCCCAGCCTCGCATATAGAAGCTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTGGGTAAAATGCTTCCAAGCAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGATAAAATCACTAAAAATACAAGCCCAAAAGCAAAAGATGAGCTTTTTAGACATATTGACAGTATGGGCTATGAAAGAGTTGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //