Array 1 658-321 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQVU01000004.1 Dermacoccus nishinomiyaensis strain UCD-KPL2528 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 657 29 96.6 32 .........G................... TTCTCCATCGCAGGGATGACCTTCGTGCCGAG 596 29 100.0 32 ............................. TCGGCCACGCCTGCCAACCCACACGCCCCGCC 535 29 100.0 34 ............................. GCTGTGACCTACTACTGCGCCCCCGCTGCCTCAG 472 29 100.0 33 ............................. TCACCGAAGCGTTCGATGAGGTGAGCGCCATGA 410 29 96.6 32 .........G................... TGGCGCCTGCGTGGGCTCAAGGACAAGAACGG 349 29 93.1 0 .........G..........C........ | ========== ====== ====== ====== ============================= ================================== ================== 6 29 97.7 33 GTCGGCCCCACGCACGCGGAGATGAGCCC # Left flank : CCTGGCCGTAACGTCGCCGCGAAAGCGGGCCTCAACCGTTCCATTCTCGACGCGAGCTTCGCCGAGATGCGGCGACAACTCACCTACAAGACTTCGTGGTACCGATCGCAGCTCCTGCCCTCAGGGCGCTTCGTTCCCACGAGCAGGACGTGTTCGACGTGCGGGGCTGAGAAACCCAATCTGCCCCGGTCGGAACGCGTGTACCACTGCGAGAACTGCGCCACGGTGCTTGACCGTGACGTGAACGCGGCGAAGAACGTCCTTCGCGCCGCTCTCGCATCCCACGACGCCCCCGGCCTGGAGGAGTCGCAAAACGCCCGTGGAGTGCGTATCGAGACATCTGTCGCGCTGCGTTCTGCGAAGCGGGAAGACCCACCGCGAGGTGGGCCACCCCGGCCGAGTAATCGCGTCCGGTCATCTCCCCCCACGGGGAAGCGAAAGTGAAGGCAAACGCTTCCCCCCACCAACTAAAAAGCGCGGAAACACAGCAACCCGCAAGG # Right flank : CGGAAACGTCCGCATCATGTTCTTGAAGCGCCCTGAGTTTGTTGGAGACTCCTGACCTTGGAAACGAGGATGGGGTTATGCCGAAGGAACTGGCGAATGGGAAGCCGACGACGCGTCGCTACTCGGTCGAGGAGAAGGCCGCCGCGGTGCGGATGGTGAGGACGCTGCGCGCGGAGCTGGGCGTCACGCAGGGGACGGTGCAGCGGGTCGCGACGCAGCTCGGTTACGGGGTCGAGTCCGTGCGGATGTGGGTCAAGCAGGCCGACGTCGACGACGGTGTCGTCCCCGGTGTGAGCTCGGCGGAGGAGCAGCGGGTGAAAG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCACGCACGCGGAGATGAGCCC # Alternate repeat : GTCGGCCCCGCGCACGCGGAGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 14325-13991 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQVU01000031.1 Dermacoccus nishinomiyaensis strain UCD-KPL2528 scaffold_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14324 29 100.0 32 ............................. AACAAACCGAACCGCGGCGCGCTACTCAAGAT 14263 29 96.6 32 .........A................... CGGGGTCACCGCCCGCTGTGGCTGGGGTGATC 14202 29 96.6 32 ................G............ GCCGGCACCGAGTTCGGCATCCTCATCGTCAA 14141 29 100.0 32 ............................. GGTTCGTGTGGCCACGGGTTCACCCTCCGCAG 14080 29 79.3 32 A........ATA.....A....C...... GAACTCGGTTGAGGTGACGCGCCATGCGGCGT 14019 29 89.7 0 ..........T....T.......A..... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 GTCGGCCCCGCGCACGCGGAGATGAGCCC # Left flank : CCTGGCCGCAACGTCGCCGCGAAAGCGGGCCTCAACCGTTCCATCCTCGACGCGAGCTTCGCCGAGATGCGGCGACAACTCACCCACAAGACTTCGTGGTACCGATCGCAGCTCCTGCCCTCAGGGTGCTTCGTTCCCACGAGCAGGACGTGTTCGACGTGCGGGGCGGAGAAAGCCAATCTGCCCCTGTCGGAACGCGTGTACCACTGCGAGAACTGCGCCACGGTGCTTGACCGTGACGTCAACGCGGCGAAGAACGTCCTTCGCGCCGCTCTCGCATCCCACGACGCCCCCGGCATGGAGGAGTCGCAAAACGCCCGTGGAGGGCGCGGTGAGACATCTGTCGCGCGACGTTCTGCGAAGCGGGAAGACCCACCGCGAGGTGGGCCACCCCGGCCGTGTAATCGCGTCCGGTCATCTCCCCCCGACGGGGAAGCGAAAGTGAGGGCAAATGCTTCCCCCACCAACTGCAAAGCGCGGAAACACAGCACCCCGCAAGG # Right flank : CGGCTCGCTGCCACACGTTCACGTCATCATCAGTTGGCTCCACGCACGCGGAGTGCAAAACGCATCATCTGGAGACGGTTTTGGCGCCCTGAGTTTGGCCAAGGGTTTTGCACACCTCTGAGAGACGCTGGGGGTCGCATCTGAGCACCCTGCTGCTCGGTGTGCAGAGACGACCCCTGCCGATCAGCTATCGGCGGGGCGAGACATGCAACTTGCGGGTTCTATAAGCAGCAGGCCAATGCCGTGTCGGTTCCCGCTGTGGCACTGACTGCCGCGCTGCCGATCGCAACCAGGCACGCTCGATACCTACTCGCTGATGGTCTCGACCGAGGCGCTTGACCCGCTCTTGCCCGGATCATTTCCCCTTCAGGAGGCGATGCCAGTAGATCAGCGGTTGGGCGAAGAGGTCGAAGGCGAAAGTGGCCATTCTGGGCCGCGCCAGAGAGATGAATGACAGGGTCTGTTCCTCGTGGCCCTGACGGTCCCACTCTGCCAAGATG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGAGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 313-523 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQVU01000040.1 Dermacoccus nishinomiyaensis strain UCD-KPL2528 scaffold_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 313 29 100.0 32 ............................. TGCGGGACCTGTTCGAGGTCAGCCCCCAGTGC 374 29 96.6 32 ...............A............. CACTTAGGAACCACCCTCGTGAGGTTGGATCG 435 29 100.0 32 ............................. CGGCTCACTGGAACGCGCCCATACGGTCGTCG 496 28 82.8 0 ...............A.C.-.T......A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTCGGCCCCGCGCACGCGGAGATGAGCCC # Left flank : CCCTCGATCGGGACCGTCGGCGATTCGTATGACAACGCCCTGGCCGAGACGGTGAACGGCTACTACAAGGCCGAGTTGGTTCGCGGGCCCACCCGCTCGGGACCGTGGAAGACGGTCGAGGATCTCGAGCTCGCGACGCTCGGCTGGGTGCACTGGCACAACACGCAGCGCCTCCACGGATACCTCGGAGACGTCCCACCCGCCGAGTTCGAGAACGCGTTCTATGCTGTCCCCAACGACAGCAATCTGCTGATCGGAATCAAATAGCGCGAGTCTCCATCAGACCCAGGGCGCTTCATTCTCGGGCGAGGAG # Right flank : AGCGCGCTTTAGGGCGTCGGCCGGGACCCGCTTAGAGCTCGCCGCACCGTGTCCCGCGACATTCCGTGCAGGCGCGCGATCTCCGAAATGCTCATGCCCGACTCGTGCGCCGCGACCATCGCCGAACGCAGCGACGGCGTGACCTTCGCCGGGCGTCCAAGCTTCTTGCCCTGAGCGCGCGCCCGCGCGACACCCTCATTCGTGCGCTCGATCAGTCGGCGGCGCTCGAACTGGGCGAACGCGAGCATGAGGTTGATCTGAGCCTCACCCGCCGCCGAGTGCGGATCGAGCACGCCCATGTCACCGGTCTCGACCGTGACTCCGCGCTGCGCGAGGTCGAGCACGGTCTCCATCGTCTCGAACATCGTGCGCCCCAACCGGTCGATCTTCGAGCACACGATCCGATCCCCGTCATCAACCGCACGCACGAGCGCGTCGAATTCCGGACGCGATTTCTTCGCGCCACTGCACATGTCGGCGTACACGTGCCGTGCGTCAAT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGAGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 11293-11020 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQVU01000017.1 Dermacoccus nishinomiyaensis strain UCD-KPL2528 scaffold_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11292 29 100.0 32 ............................. GTGCGGCGCAACCGGGTACGCGTGCGGGCGCT 11231 29 100.0 32 ............................. TGCTCAGCCACTCCGGCCACGTCCTGCGCGGG 11170 29 100.0 32 ............................. AGGCACGGGGAGTCGGCCACCATCTCGAGGGC 11109 29 96.6 32 ..........A.................. GCGCCGGCGTACCAGACACCTTGCCCCGGTCT 11048 29 96.6 0 .........A................... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTCGGCCCCGCGCACGCGGAGATGAGCCC # Left flank : GCCTGGCCGCAACGTCGCCGCGAAAGCGGGCCTCAACCGCTCCATCCTCGACGCGAGCTTCGCCGAGATGCGGCGACAACTCACCTACAAGACTTCGTGGTACCGATCGCAGCTCCTGCCCTCAGGGCGCTTCGTTCCCACGAGCAGGACGTGTTCGACGTGCGGGGCAGAGAAAGCCAATCTGCCCCTGTCGGAACGCGTGTACCACTGCGAGAACTGCGCCACGGTGCTTGACCGTGACGTCAACGCGGCGAAGAACGTCCTTCGCGCCGCTCTCGCATCCCACGACGCCCCCGGCATGGAGGAGTCGCAAAACGCCCGTGGAGGGCGCGGTGAGACATCTGTCGCGCTGCGTTCTGCGAAGCGGGAAGACCCACCGCGAGGTGGGCCACCCCGGCCGAGTAATCGCGTCCGGTCATCTCCCCCCACGGGGAAGCGAAAGTGAAGGCAAACGCTTCCCCCACCAACTGAAAAGCGCGGAAACACAGCACCCCGCAAGG # Right flank : ATGCTGAAAACGACGATCGGGCCCGACTGGGGCCTAGTCGTTCAGACCGTCATCTCTGCGTAACGCTGGAACAGCACTGCCTGCCGATCCTCCATCGTGTGCATCGACTTCCGCGCACCGAACGCTTTGTCGACCACACGGTCTAGGGCGCGGTGGGCCTTCAGCAACTCAGGTGTCATCCCCAGCGGGCTGTAGTGGTCAGCTAGAGACCATTCCGGGTGCAGGTCTCGAGCTGCTTGAACGCCCTTACCTGCTTCGATGATTTCGGATAGCACCTTGTCGGTCACCTGGGGCAGCGGGAGCGTGTTCCATACAACGGTGTTCGAGAACCGGTAGTCCGACTTCAGCTTGCCGCCGATGGTGGCGAGCCATGTTTGCAACATGCTGCTGCTGACGACCCCGAAAGCGAAACCGTCGGGATCGGGGCACGTGAAGACGCCGTCACTGGCGACGACGTCTTCGTTGACGCGGCGGGTGGGCAGGTAGGAGCGGTGCTCGCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGAGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //