Array 1 23334-23546 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZEY01000019.1 Bailinhaonella thermotolerans strain YIM 75507 Scaffold19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 23334 30 100.0 31 .............................. GCCCGGGTGGTGTCGCGCACCCTGTCTCACA 23395 30 93.3 31 ............................GG GAGCCTGCCATGGACTCCGAACGAGCCCAGA 23456 30 90.0 31 ..G.........T................T CCATGCCGTCTTCGAGGATCGGCGTCCCGCC 23517 30 90.0 0 ..G.......................T..G | ========== ====== ====== ====== ============================== =============================== ================== 4 30 93.3 31 CTACTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CGACGCTGATCCACGCCCGGACCGACTCCGGCCACCTCACCTTCCACGGCGTCTACAAGGCCGCGCTGATCCGAGCCGACAACGCCTCGGGCAGCACCGCCTTCCGCGGCCGCTACCTGCGCCGGCTCACCTTCCTCACCTCCGGCGCCGCCCCCGTCCACCACGACTGACCAAGCCCCACCAGCCCCGAGCCCGGCTCTGAGCCCCCAGACCCCGAAACGAAAGAGCGCACCCGGGTTGGGTGCGCTCTAACCATCACCACCCCGCCCCGCCATCGACGACCACGATCAGGACAAGCACAGCCGAAAAGTCCCGTTGACACGGCCAAGCAAGCCCGAGGATGCCTGCACAATGAGAAAAAGCCCCAACAGGGCAGCAGCGGGAGACCCACCACCCTCGACCGCTATCGACGAGAAAGCGAAGTAGCGGACCATATGTCTAAATTCTCAAAAGTGCTCGAAAACGCCGTCGACCGCTGACAAACCTGCAGGCCGCGAAGC # Right flank : GGATTCCCAGCAAGACCGACCAGGACGCCCACCGCAGGGCCAAGGGGTCGAAGGGAGGCCGGCCTCCCGCCTTCGACCCCATGTTCTACCGGCTGCGCCATGCTGTGGAGCGAGGCATCAACCTGCGCAAAGGCAACCCCGGCATGGCAACCCGCTACGACAAACTCGCCGTACGCTCGAAGCCGTCGTCATCATCGCCGCAATCAACCACTGGCTCAACGCCTTATGAAACACCACCTAGAGGGTCACCGCACGAGCGTGGGCGGCGGGTCGCCCAGGAGCATGAGGAAGTCCTTCAGGATGAGGTCCGCCTGATGCTGACCGTCCTCCAGCGACAGCGCCTCCACGGTCGGTCGCGAGCCCTTTTCTCCCGGCAGGTGGACCCACATCTTCCAGCGTCCCCGCGTGAACTCCTGGAACAGGAAGAAGGCGCGCGCCCCGCCCAGATACCCCGAGTACGAGGGCGAGGCGTCCCCGTCCCGCCGGACCCGCCACTCGAT # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31819-32030 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZEY01000019.1 Bailinhaonella thermotolerans strain YIM 75507 Scaffold19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31819 29 100.0 32 ............................. CTGACCCTGCGCGTGTCGAGCACGTCGATCGT 31880 29 100.0 32 ............................. TGGCCGACGACACCGTCGCCCGCTGCCAGGAG 31941 29 100.0 32 ............................. GCCACGAGGCCCGTGAGGATGGTCTGCACGGC 32002 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCGCACGAGCGTGGGCGGCGGGTCGCCCAGGAGCATGAGGAAGTCCTTCAGGATGAGGTCCGCCTGAACTGGCCGTCCTCCAGCGACAGCGCCTCCACGGTCGGTCGCGACCCCTTCTCTCCCGGCAGGTGGACCCACATCTTCCAGCGTCCCCGCGTGAACTCCTGGAACAGGAAGAAGGCGCGTGCCCCGCCCAGATACGGCTTCCTCATTTACCTTCGCCCAGAGCGGGCACCAACTTTGCAAGCGCTGAGCTGGCCGATCATGGCGCCGGCAGCGGGGTCGCGCTGGCAGCTCCAGCCGCACAGCGGCCACAGAAGACCTGCACGGTGAACCTTTAGGGCGGCTGCATAATGAGATACCTCGCCCAGACCGAGCAGCGGGAAACTTCCACCTACGACGACTATCGGCTAAGACGTGAAGTAGTGCCCTCGATGTCCAAATCTTCAAAAGTGCTCGAAAACGCCCCCAGCCGCTGACAAACCTGCAGGTCGCGGAGT # Right flank : CGAGACGACGGTGCTCGGCACGAGCGCCATCGCATGCTCCCCGCGCACGCCGTGTCATTTGCGCGGTTGCTTCGCGTCGGCCAGCACTGGCCGCGTCGGGCCACAGACCGCTCAGGTGCGCGATGTAGTAGCTGCGGATGGCCTGCTTGAGGATGTCGTGCCTCTCGTCGCCCTCGGCGGGAGCGCAACTCCGGAGCGGCTCATGCTTCTGTTCCTTTCCGGGTCAGGGCTCGTCGCCCTCGGTCAGTGCCCGCAGCACCTTGGCCTGCTCGACGTCGGTGCCCTCGGCCCGCATCCGAGCCGCTTCCTGGGCGGTGAAGCCCGCCGCGCACCAGGCCGCCACCTCGTCGATCGGCACCCCGGCCCGCCAGAACGCCGTCATCAGGGAGATAGCGTCCTGCCCCGAAGCGAGCACCCGTTCGGCCTCGCGGGCGGATAGACCGAGTGCTTCGAAGACCCGTGCCTGTCCCGCCTCGATGCCGCGTTTCGCCCACTCCACC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 37133-37527 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZEY01000019.1 Bailinhaonella thermotolerans strain YIM 75507 Scaffold19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37133 29 100.0 32 ............................. AGGCCCCGGGTTGGGTCACTCAGGAAAAGGGC 37194 29 100.0 32 ............................. ATGTGTGCGACAAGCTCGTCTCGTGTCGATCG 37255 29 100.0 32 ............................. GCCGACGGCGACTACTACGCCGCCGACCCCGA 37316 29 100.0 32 ............................. GACGGCCGATTCCCGGACGAGTCGCCGGTACT 37377 29 100.0 32 ............................. AGGGGACCGTAGGTGCCCTCTCCCTCGAACGG 37438 29 96.6 31 ........G.................... CAGGACGTCACGGCACGTCGACCCCATTGAC G [37461] 37499 29 79.3 0 ............TC...C...GC.T.... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GAATGGCGCGCCGTTTGGGGCGGCGGACGGGCTGGTGGCGGCGTGGACCTTGTTCCGGTGGGGGAGGGCGCTGCGAGGCCCGGATGCCGGGCGAGCAGGGCGGCTCAGAGCCGCCGAGGCGGGCCTGGCCTGGCTCGGCGCGGACCAGGCGGCAGGCGAGTCCGCCCATCCCGGCCGCTGACCTGGGCCCCTTCGCATTACCGGGCCATACCGTGGGGCGGCCAGTGCCGCCACGGAGCAGAGCGGACACCAACGTTGAAGGCCCTGATCTCATGGCGCCGGCAGCGGGGCGAGCTGGAAGCTCCGGCAGTGCAGTGGGCACTGAAGACCTGTGGACTAGAAGGCGCCTGCATAATGAGATACCTCGCCCAGACCGAGCAGCGGAAACTGCCAACCACGACGACTATCGACCAAGACGCGAAGTAGTGTCCTCGATGTCCGAACCTTCAAAAGTGCTCGAAAACGCCCCCGGCCGCTGACAAACCTGCAGGTCGCGGAGT # Right flank : CTGGATGGTCGCGGAGGTGCGGTGCCTGCGGCCGCCTCCCCCAGTGGAGTGGTGATGGCTCAGCAGGAGGAGCGTCGCGCCCGTCCCGTCCCGCGTCGCCTGAAGCAGCTCCCGTCCCCGCGAGACGCCCGATCGGATCACGTCCCGGCAGGGCGGGCGTCGCGGCCAGGAATCGGTTGGCGGGCGGGTCTGCTGCGGCTCGGCCGGGCCGCTACGCTGAGCGGCGCCATGCCCGATATCCCCCCACCGTCCGGGCCGGATCGGCGCGACTTCCTTGGCGCGCCCCTGCCGTACAGCCCGCCGCACCCGATCACCGCCCACCCCCTGCCCCGGGACGGCCGCCGCCACGTCGGCCAGCTGGAGCCGCTGCTGGTACGGCAGTGGCCGCCGGGCACCCGGCCGTCCCAGCCGCTGGTGGACGCCGTCGACCGGCTCGCCGAACTGCCCGCCCACCTCACCCATCTGCTCGCCGGGCACCTGCGCGCCATCTACGTCGGCCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97274-97788 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZEY01000017.1 Bailinhaonella thermotolerans strain YIM 75507 Scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97274 29 96.6 32 ..........C.................. GACCAAGAGGCAGCGATCCGCGCGGGCACGTA 97335 29 100.0 31 ............................. CATCCGGAGGACGCACATGATCGACGAGAGG 97395 29 100.0 32 ............................. AACACGATGTTGCCGCTGTTGATGAGGTTGAG 97456 29 100.0 32 ............................. ATGCGGCCGGTGACGGTCGTGAAGGGCGCGAA 97517 29 100.0 32 ............................. ATGCGGCCGGTGACGGTCGTGAAGGGCGCGAA 97578 29 100.0 32 ............................. TTGGCCACCTCGTTCAGGTCGTCCCACGCCAT 97639 29 89.7 31 .........AC.................G CTCGCCCTCTACGAAGAGGGAGCCCCCGACC 97699 29 93.1 32 ..........C..............T... GTCAGGCTCACGACGCGGCCTCCTCGTCTCGG 97760 29 79.3 0 G.........CA.T...........TT.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 CTGCTCCCCGTGCACGCGGGGATGGCCCC # Left flank : CCCAGACCATCCACGCCTGGGCCCAGCACTCCACGCCCCAGGCCTGAACCCATCCCCAACCCACGTGTCCCCGGCACCCCCGCCGGGGACACGTCCCATTCCCCCCAAAACCCCCGCCCGCCCACAACCACTGCGTGGGAGAACACACAGCGACCTGCGCCTACGCCACTATGGCCCGCCTAGTCCGGGAGTCCCCTGGGATCGGTGACGACGCGTTGATCTATCTCGACGAAGACACACGACACAGCGCTCGCTGATAATCACCATGATCAGACGGGTCGTATCGCCGACACTGAGCATCCTCACCTCGCACCGATGAGAGCCTTCGCGATCATCCAGAAGAGGACTGCACAATGGAACACCCCGCAGCCCCACCAGCGGGAAACTTGCCACCGAACGACGACTATCAACCGGAACGCGAAGTAGTAACCCCAATGCCCAGATCGCTAAAAGTGCTCGAAAACGCCGCCAGCCCCTGACAAACCCGCAGGTCGCCGAGC # Right flank : CGCGATGACGGGCCCATGTTGGACGCCATCGTCTGCTCGCTGGGCACGCGGGGAAGGCGTGCGTCGTCGTGCTGGGTGGTCGTTAGGGGGCGTGGTCGGCGATGGTGGTGAGGTGGTTGTTGTGGGGGAAGGTCCATAGGCCCAGGTTGTGGTGTTGGAGGTGGGTGAACCAGGCGGCGGGGCCGAGGGTGGGGCCGACGCGGTCGGGGGCGGCGGACGGCCAGGGCAGGGCGAGGCGGCGGGCGCAGTCCTGGCGGGCCTGCGGGTCGAGGTCCGGGGGGAAGGGGGTGCGGACCTGTAACGCCAGGCCGTCGGGGGGCGGGGTCTGGAGGGGGGTGGCGCGGGGGCCGAGCAGGTGGCGGTGGGCCTGGGTCACGGACTCGGCCACGGCCCGGGTGACGGCGTCGAGGGGGTCGGGCGTGTGCGCGGCGATGCGGGCCAGGTCCTCGGTCGCGGTCATCGCGGCGGTGAGGGCGTTCTGCGCCAGGTCCCGGATCTCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120461-120611 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZEY01000017.1 Bailinhaonella thermotolerans strain YIM 75507 Scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120461 29 96.6 32 .........................C... TCCAGGGCCCGCCTTGGAATCGAGTACGTGTA 120522 29 100.0 32 ............................. CACGGCAGCAGCATGCGGGACGCCATCGACCG 120583 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CTTGATGATGTCGCGGTAAGGCACAACGACCGCGATATCGCGCCCGCCCAGGCCGACGTATGACAAAGTCACTCATCCCACTCGTGTGGGAAGCAGACTGCCCAAGGGATATGCACTCTCGATGGCGGAGGACATCCCCACGTGCGTGGGGAGCACTCCATACCCGCGTACCGGAGATAGCCCTCGTGGGGATCATCCCCACGTGTGTGGGGGAGGACCCTCCGTGACCTGGTGGTCTACCCGCCAAATGATCAATTGGCGGAGGATGTGGGTGGCCCCGCTGGACGGGGAGGAGAGGTGTTGGAGGTGGTTCATCGCACCGGCCAACGGGTCAGCCCAGAGGATGCTGCACAATGAGATACCCCGCAAGCCCGCGCGGCGGGGAACAACCAGCCCACGCCAGTTATCGTCCAGAGCGCGAGGTAATTACCTCAATGCCCAAATCATCAAAGGTGCTCAAGAACACCATCGGCCGCTGACAAACCCGCAGGTCGCCGAGT # Right flank : CTCGTACCATGCCCTGTCACGGGACCACGAGGATCTGTGGTCCCGTGACAGGTCTCGGAGGGTGGGGATGTGGGCGGTGGTCAGGGCTGGATGATGGGCTTGGTGATGTCGCGGTGGGACAGTGTGGCCGCGACGCCGCGATCGCGGAGGCCGGCGGAGATCGCCTCGGCCAGGGCGACCGAGCGGTGGCGGCCGCCGGCGCAGCCGGTCGCGATGCGCACGGGCCTGGCGCCGGGGGGCAGGTCGGTCACCAGTTCGGCGCCGAGCGTCACCGTGGCGGCGACGACCGCGCCGATGCCCGGGGTGGCCAAGACGTGCCGGCGCACGGCGTCGTCCAGCCCGGTCAGCTCCCGCATCCGGGGGTCGGCGTGGGGGTTGCGGAACAGCCGCCGGGCGTCGATGAGGACGTCCGCGGTGGGCGGGTCCGCGTGGCCGTAGCCGAAGGAGATCACCTCGACGGCGGGGTGGGTCATGGCGGAGGGTCCTTCCCTGGGAGGAAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //