Array 1 465580-464883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERQM010000005.1 Roseomonas oleicola strain ROY-5-3 spades_K_25_97_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 465579 29 100.0 32 ............................. ATCGCAGCGACCTTCCGTGGTTCCGTCTCGAC 465518 29 100.0 32 ............................. CCCACCGCATGCAGGCACTCGGCCGGGCCGAG 465457 29 100.0 32 ............................. ATCATGCCGAAGATCGGACCCCAGAACGTCTG 465396 29 100.0 29 ............................. TCGGGCGCGGAGGTGCATTTCACCCTGCC 465338 29 100.0 32 ............................. CCGGTTGCATTCGGAATAGCGGCGAGGCCGGC 465277 29 100.0 32 ............................. CACCTGCCGCTGATCGAGGTGGCCGCGATCCG 465216 29 100.0 32 ............................. AGTTCGGCATCCCCGAGCACTTCTTCTTCGAC 465155 29 100.0 32 ............................. ATGTTGCGGACCTTCACGGCGCTGGACCTGTC 465094 29 100.0 32 ............................. CTGACGGCCACCGCCGCGGCCGTGGGCGCGCC 465033 29 100.0 32 ............................. GCCCCGCCGGGTCGTCAGTAGGTGACGCCGGT 464972 29 100.0 32 ............................. ATGCTGTCGGCGGAGGTGCGCTTCGCCACGCC 464911 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCAGGCGCGGGGATGTCCCG # Left flank : CGGCGTGAGCGCCAAGCTTTGGGAACTGGCCGATATGGTGGTGGTTTTGGAGGAATGGGAAAAGAGTCAGGGTCAGAAATCAAACTGACCCACTACCGCGCGGGGATGTCCCGCATCCGTCGACCTCGATGTGCTGTATGGCGG # Right flank : CCGAAAAGCTGGAACGCCGCGAAGCGCCGGTAGGCGCCGCCGGGGCGGAGGACCGGTAAAGCAGCCGGCGCACCAGGTGTTTGCCTCCGGGAATCCAGCGGCGGTCCAGAACCCGTGACCGGTCCAGATCCAGTCCAGCGGGATACGGTCTTTCCAAGCCATGCAGGGGCGCCCCGGCACACCTGTTCCAGTCCCAGCGTGTAGAGCGGCGAAGTCGTGCGTCCGGGCATCGGGCTGCGCCACCGTGGAACGGGTCAGGACCGAGCCCGGCTTTTGGCAGCGGCCTGCATGCCGCGCGTCGCATCCGGACGCATGACCGGCACGACCCTGGGCCATGCTCGACGCTTGGCCGCGGTGGTGGCGGAGATCGGCGGCCGCCCATCATTGTCAGCCTTCCTGGCCGCAGGACGACCTCTTCGCGCAGCGACGACACCCTCGCCGGATCCCACCACCGCCCGCCGCCGCCGACCCGACAGGGTCGCCTGCGGAAGTGCCAGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 187077-190035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERQM010000007.1 Roseomonas oleicola strain ROY-5-3 spades_K_25_97_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187077 29 100.0 32 ............................. GTCCACCCGCCGAGGCCCTTGGCCACCAGCGA 187138 29 100.0 32 ............................. TCGCGGTTCGGGCCGAACACCCGGGCGCTGAA 187199 29 100.0 32 ............................. GGCCGCACGTCCGATCCGGTCGGCGCGCTGCT 187260 29 100.0 32 ............................. GTGCCGGCTCCTACGGGTGGCTTTACGACGAT 187321 29 100.0 32 ............................. AAGTGAACCTGCGTGAAACTGCGAACGTCATC 187382 29 100.0 32 ............................. GAAGCTTGGCCCGTGGGAAACCCTGCCGACGC 187443 29 100.0 32 ............................. CCGTCCTGGCCGAGCGGCAGCGCATCGCCGCC 187504 29 100.0 32 ............................. GTGACTATGCCGGGCGGCGCGACAATTCCAGA 187565 29 100.0 32 ............................. GGCTGGGCCGCCAGCGCGCAGGCGTTCCGGGT 187626 29 100.0 32 ............................. TAGGTGCCGGACACGAGCGGGAGTAGCGCGAA 187687 29 100.0 32 ............................. GATGACAGACGATGCCGGCTGACCGCACGCCC 187748 29 100.0 32 ............................. GTGGTAGGCGTCGGCTTCGTCCACCAGCTGGC 187809 29 100.0 32 ............................. GCCTACCAGATGCCTGACGGCACGCTGGTGAT 187870 29 100.0 32 ............................. GCGGGTCCGCCAGGATGAGGCGGTAGTGGCCT 187931 29 100.0 32 ............................. GTCTGGCACGACCCGCATGCCGGGCACGGCTC 187992 29 100.0 32 ............................. GCTGACGTTCTGCTTCTGGTTGGCGCGGGTCT 188053 29 96.6 32 ............................T GCGTTCCGTTCCAGGATCGCCGGCTGGAGAAT 188114 29 100.0 32 ............................. GCGGCCGAGACGTCGGCAGAGCGCGAACAGCT 188175 29 100.0 32 ............................. AACCCTCTGCCTGGCTTCATGCAGCCTCGGGT 188236 29 100.0 32 ............................. CATCCGTCGACCTCGACGTTCTGTACGGCGGC 188297 29 100.0 32 ............................. GCTGACGTTCTGCTTCTGGTTGGCGCGGGTCT 188358 29 96.6 32 ............................T GCGTTCCGTTCCAGGATCGCCGGCTGGAGAAT 188419 29 100.0 32 ............................. GCGGCCGAGACGTCGGCAGAGCGCGAACAGCT 188480 29 100.0 32 ............................. AACCCTCTGCCTGGCTTCATGCAGCCTCGGGT 188541 29 100.0 32 ............................. CATCCGTCGACCTCGACGTTCTGTACGGCGGC 188602 29 100.0 32 ............................. GCTGACGTTCTGCTTCTGGTTGGCGCGGGTCT 188663 29 96.6 33 ............................T GCTGATCCAGGCGCACGCATGAGCGAGGCCCTC 188725 29 100.0 32 ............................. CCACCGCTACCGGCTCATCCGCAGAGAGGGCA 188786 29 100.0 32 ............................. GCCCGACACGCCGGGCGCGACCCGAAGCACTA 188847 29 100.0 32 ............................. CACCAGCAGAGGTTGGCGAAGAAGGGGAGAGG 188908 29 100.0 32 ............................. GAACAGGCTCAGGTACTCTGGCTGGCGCGGAT 188969 29 100.0 32 ............................. GCGTAGTCGTGCCGACCCCAATCCTGACGCTG 189030 29 100.0 33 ............................. TTGTCGCTGGTCCCGCCGAACAGGCTCTGGCCC 189092 29 100.0 32 ............................. CCCGTAGCCGCCTCGTCTGGCCAGGACGCCTC 189153 29 100.0 32 ............................. GGCCCGCAACTGCGCTTCCAGGTCCGCCAGGC 189214 29 100.0 32 ............................. TCGTCGTAATCCGCATCCTGCTCGCCCAGCAG 189275 29 100.0 32 ............................. CTCGGGTCCGGCATCGTGACGCCGGGGTCCTC 189336 29 100.0 32 ............................. GTGAGCGACGCTGGCGTGCCGCTCGGCGCGTT 189397 29 96.6 32 ............................T CGCACCGGCCCCCAGTTCAGCAGCCGCCGTGA 189458 29 100.0 32 ............................. AGCGCGCTCGGGTCTACTGGCACGACCAGACC 189519 29 100.0 32 ............................. TACGGCGGCCAGCATTTCAGGTCATGCTGCAG 189580 29 100.0 32 ............................. TGGCGGTGCATCGCCGCATCCATCGCCTCGCC 189641 29 100.0 32 ............................. GTCAGCCCCGCGTGCGACCACTGCTACGCCGA 189702 29 100.0 32 ............................. ACAGGCTGGGCTGGCGCCTGCCGTCGCGCCGG 189763 29 100.0 32 ............................. CGGCCTTGCTGGACGATTCGGCGCTGGCCGAC 189824 29 96.6 32 ............................C ATGCCAATGACCCACCCGTGTTCAGTGAAAGA 189885 29 100.0 32 ............................. CGGTGCTGGTCGCGCGCCATGCTCGCATGGGC 189946 29 89.7 32 ..............T..A..........C TGGTCCTCGGGCGCGGCGTTGACGATTGCCGC 190007 29 79.3 0 ....G....AA.....T.....C.C.... | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.0 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TGCCGGTGCCGGGCGGCCTCGGCACGCATCTGACCATCGATCTCGGCGGTCAGGCGCGGTTCGGGCCGGATGTCGAATGGATCGAGGCCATCGACTACAATGTCGATCCGCGGCGCGGGGAGCTGTTCTACGACTCCATCCGCCGCTGGTGGCCGGAACTGCCGGATGGCGCGCTGGCCCCCGGCTATTCCGGCATTCGCCCGAAGACGGTGCCGAAGGGCGCGCCGGGGCAGGATTTCGTCATCCAGGGTCCGGCGACGCATGGCGTGCCGGGGCTGGTGAACCTGTTCGGCATCGAGAGCCCCGGCCTGACGGCCTCCCTCGCCTTGGCGGAGGAGGTGATGGGGGTGGTGCGGGCCTGAAATTCCCCCCAATCTGCCCGCCCTAGGCCTGGACGGGCTGCCTTGACCGTGCGCTTGGCCACGCTTCAGAGGGTGGTTCAGATCGGTACGTTCGTTGACAGATGAATCTGCCAGGATATTCAAGGGTATCCAGGAAGA # Right flank : GAACGTCCCTTCCCACAGCCATCTCTCGCCCATGCCGGTCGGCCGTCAGTCCAACCGCAGGCCGGCGGGGCACACAGAACGTGCCCCGCCTGAATTCACAGCGTGAAGGTCACGCCGATCTCCGGCACCAGCACCTTCGCCTTGGCCCCCGCCATCTCCCGCTCGAAGACCGAGGCATCCGGGGCGATCATCGGGAAGGTGCCGAAATGGCAGGGGATGGCGGTGGTGACGGACGGGAGAAAACGCTGCACGGCCAGGGCGCCGCGCTTGCCGTCCATGGTGAAGCGGTCGCCCACCGGCACCATCGCGACCGTCGGGCTGTGCAGCTCCCCGATCAGGGCCATGTCGCCGAACACCTCGGTATCGCCCATGTGATAGATCACCGGCTCGCCCTTGGCCTTCGGCGTGATCACCAGCCCGCCCGGCAGGCCGAGGTCCTGGGTGATGCCGTTCTCGTCCATGACGGAGGAGGAGTGGAAGGCGATGGTCAGCGTCACCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1451-90 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERQM010000009.1 Roseomonas oleicola strain ROY-5-3 spades_K_25_97_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1450 28 86.2 33 ....................C-...G.G. AAATCCAGGCGGCGCGTTCCCTTGCCGGCCTGA 1389 28 86.2 24 ....................C-...G.G. TTGGGCCGAGTACCACGAGGGCAA Deletion [1338] 1337 29 100.0 32 ............................. GCGCATGAGGTCATCCTGCAGCTGAGGGGGAT 1276 29 100.0 32 ............................. TCCACGAACATGTCGGTCTCCAGCGGATCACG 1215 29 100.0 32 ............................. CACGAGGAAATCCCCGAGGAGCATCGCGCGAC 1154 29 100.0 32 ............................. TCGCACGCGCCGATCTGCTGCACCGGGACCAG 1093 29 100.0 32 ............................. TCCGCGCCGATGAAGCGGCCGCCCTGGATGCC 1032 29 100.0 32 ............................. GCCGCCGCCTGGTTTGCCGCCCGCGCCGATTG 971 29 100.0 32 ............................. GATCGGTCCGTTGTAGGCCCAGCCATCATTCA 910 29 100.0 32 ............................. GCGAATCGCACCGACTGGATGGCGCGCAACAG 849 29 96.6 32 ............................T ACCTGGCCACCCTGCCGCCGCGCTGGCCGGCC 788 29 96.6 32 ............................A GCCCGTCGCGCGTCCAGCCGGCCGGGCCGTGC 727 29 100.0 32 ............................. GCGCTGGTGCTGGAGGGGAAGAACGCCCTGCG 666 29 100.0 32 ............................. GGTCAGGATGTCCCGGCGTCGCAGTCCGGCCA 605 29 100.0 32 ............................. GCCACCGTGGTGCGTTCCTGGATACCCAGGAT 544 29 100.0 32 ............................. GCCTCACGCAGCCGGGGAGGCGGGCGGTGAAG 483 29 100.0 32 ............................. GCGGACGACTGGGGCAGGGAGGTCCGGAACCA 422 29 100.0 32 ............................. GCGTGCGGCTGGGTGTGCTCCGGCAGATGCGC 361 29 100.0 32 ............................. AGCGGGGTGCATCCCTTCAACTTCGCCGGCTC 300 29 96.6 32 ..........T.................. CCGAAGAAGCTGATCATCGCGCCGGATCAGCA 239 29 100.0 32 ............................. CCTCGGTTGTAGGCGTCGCTGATTACGCGACG 178 29 100.0 32 ............................. GGGGCCTCGGTTTCCATCCCGCTCGGCACGTC 117 28 82.8 0 .....................G-..AGT. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.6 32 GTGTTCCCCGCAGGCGCGGGGATGTCCCG # Left flank : GTGCTGACCGCCGGCGGCCTGCCGATGCCGGAAGCCGCCCCCGAGGCGATGCCGGTGGCCTTCGACACGCCGGAGGGGTTGGGTGATGCTGGTCATCGTGGTTGAGAACGCCCCGCCCCGGCTGCGCGGACGGCTGGCCGTTTGGCTGCTGGAGGTGCGGGCGGGCGTCTATATCGGCGACTATGGTCGCCGCGTGCGGGAGATGATCTGGGGCAACGTCTGTGCTTACATCGAGGATGGCAACGCGGTGCTGGCCTGGTCGACGCCGAATGAAGTCGGGTTCGAGTTCGATACCTGCGGTCTGAACCGCCGTATCCCGGTTGATCTCGACGGCCTCCGTCTGGTGCGTTTTGTGGCTGAAGCGGCCCTTCCAGCGGAACCTGGGCCAACTTCCAACCAAACCCGCCGCCGAGGTCGTGGGGCGGCCTGAAAAGGCCGTTCGGGCCGGTAGGATCTTTGAGATGAGAATCAGCCAAATAAATCAGTGCACTGCACGAAGA # Right flank : GGGTCAGTTTGACCGGCCCTGAATATATTCCGCTCAGGCAAGGCGTGCGTCGCGGCGGGCCGGGTGGCATACTGAGCACATGGCAGAGAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //