Array 1 437351-437703 **** Predicted by CRISPRDetect 2.4 *** >NC_013891.1 Listeria seeligeri serovar 1/2b str. SLCC3954, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 437351 29 100.0 37 ............................. AACTTTTTAGTTCGAGGTTGCTACTATATTTATTATT 437417 29 100.0 35 ............................. TTAACCCAATCCCCTCCTAAATTAACTTAACTTTT 437481 29 100.0 35 ............................. TTGAAACTTTAATTATGATGCAGTACGGCTATTAT 437545 29 100.0 36 ............................. AGTTTTGTGGATGATTTCCATTGGAGACTTACCAAA 437610 29 100.0 36 ............................. CCGTCAGATTGATTATAATAGATTGTCCGTTTTTCT 437675 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTATTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 443925-445697 **** Predicted by CRISPRDetect 2.4 *** >NC_013891.1 Listeria seeligeri serovar 1/2b str. SLCC3954, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 443925 29 100.0 36 ............................. AATAATGTTCAATACAATGGTGGTAATACCATGAAG 443990 29 100.0 35 ............................. AAAACCAACGACGTATAACAAAATTGGCGATGGAT 444054 29 100.0 36 ............................. ACTAACGTAGAAGCGGGGGCGGTAACGACTACTAGC 444119 29 100.0 35 ............................. AGATTTGAAAAAGGCAATCAAGTTTTTGGAATTTG 444183 29 100.0 36 ............................. CTTCAAAGAGCAAAATAAACAAGCACTAAAACGTTT 444248 29 100.0 35 ............................. TCTAATGGGACATGATGGTGATATCGTTGATACTT 444312 29 100.0 38 ............................. ACCTGTTAGGTCGGGAGGATTCGAGAGGTTTAGTTGTT 444379 29 100.0 34 ............................. CGAACTTGTAGCGTATGCCGTTACCTACAGTGCA 444442 29 100.0 35 ............................. GACTTAGAGGAGTTAGGAGCCGTAGAATCCTCATC 444506 29 100.0 34 ............................. ATGAAACCAGAAACAACGGAAAACCTTCACGAAT 444569 29 100.0 36 ............................. ATAGCATCCCCAGCCTCATAGTTCCCCATGATAAAC 444634 29 100.0 35 ............................. ATTTACTTATACATGGGTCACCATGCCAAGATTTC 444698 29 100.0 35 ............................. AAAAACACAAGTGGTTCCTGAAATCGACAAATACC 444762 29 100.0 36 ............................. TCCTTTAGATACTCTCCCTCATCAAACACTATCTCC 444827 29 100.0 36 ............................. TCATTCATTCCGCTATTCCAAATCTCAATAGTATCG 444892 29 100.0 36 ............................. ACGGTCTATCGAGCGAAGGCGGGAAATTTTGGTAAA 444957 29 100.0 36 ............................. TCATATTGCCCTTTCAATCCCCATCTTGCATTCATT 445022 29 100.0 34 ............................. CCCCTCGAATGGCTTCATCATCGCATGTGCCTAG 445085 29 100.0 34 ............................. ATCATTATTGATGTTACTAGCAAAATTCCACTTG 445148 29 96.6 37 ............C................ TAGTAGGAATTTCCGGTTCTTCAGTTTCCGGTAAAGA 445214 29 100.0 37 ............................. TTGCCAGTTGTCCCAAAAACGCGCCCCAATCTTCTCG 445280 29 100.0 33 ............................. GAAAAAGAATATGTATTCCACAATGCTAGTTTT 445342 29 100.0 36 ............................. GTAATTAAAATTGTCCTATTTTCTAAATCTATCAAG 445407 29 100.0 37 ............................. TCTGCATTATCTGAATCTGATTTAGCTTGCTCCATCT 445473 29 100.0 37 ............................. GTTTTTGGTAATGGTTTTGGTGGAATTTTTTCATTGA 445539 29 100.0 36 ............................. CCAGAAAAGTTGCATATAATCTTTCCGCTTGGGTTC 445604 29 100.0 35 ............................. ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 445668 29 86.2 0 ........C....C..A...........G | T [445694] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 99.4 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCTAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGATATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGATGGG # Right flank : GCCCTTCAATCATGCTAGTAATGCTACAAAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGATAGTAGCACTATAATAAATTTCCCAGTCAATAAAAAATTAAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTGGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTGAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAATAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 454307-456081 **** Predicted by CRISPRDetect 2.4 *** >NC_013891.1 Listeria seeligeri serovar 1/2b str. SLCC3954, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 454307 29 100.0 35 ............................. GAATACTGAAACGGCTGTTCAAGCTAATTATTTTT 454371 29 100.0 37 ............................. CTTTTTAACTTAAATTATATTATACTAATTAAGTTTG 454437 29 100.0 34 ............................. AAATTTAGGAGGAACTTAAAAATGAACAGATACG 454500 29 100.0 37 ............................. CTCTTCCGCGAGTGCCTTTTGACTCTTGTAGCGCTTT 454566 29 100.0 37 ............................. CAGGTAATCAAGCTGAAACGATTAAAGGAATTAAAGA 454632 29 100.0 37 ............................. TTGGGAATTCGTGGTAATATTGTACTACGGGAATAAG 454698 29 100.0 36 ............................. GCACGAGGCGAATCGGCAGGAATAGGTTCCTTCATT 454763 29 100.0 36 ............................. ATACCCAATTGCCATTCTCATCTCGTTCATAGTCCC 454828 29 100.0 38 ............................. GTATTTAGGTTGAGATTAACATACCCGAAATAACTATC 454895 29 100.0 36 ............................. TTGGACTTTAGTTTGACTGTCTCTGGTACTTTAGTC 454960 29 100.0 34 ............................. TCAGGCAACACCTTAAGCGCCTTGAATAGATTCA 455023 29 100.0 37 ............................. CAGAAGCAATGCACCAGCCACCGCTAAAAATGTAATC 455089 29 100.0 37 ............................. GCAGTTACAAATTTAATAATTTCATTTCTATATTTTA 455155 29 100.0 34 ............................. TCTTGTATTGCTTCTTTAATACACATGCGCATAT 455218 29 100.0 36 ............................. CCTCGAAAGTACGTATGAGCTTGTAACGGGATTCAT 455283 29 100.0 35 ............................. CTACCTTGCAGCGACAGCGCGTAAGTCGCAACATC 455347 29 100.0 35 ............................. TCTGTTGCAAACGCTATGCGTATTGCAGAAGTGCT 455411 29 100.0 36 ............................. CGCTGTCATGGCATAAGTATGGACCGTGGAATTATA 455476 29 96.6 36 .......................A..... ACGAGATGGTAAGAACGCATTGTTTGACTCGCTCCA 455541 29 100.0 37 ............................. AAAAGTATTCGCTTCTTTGATAAATCAATTCCATCAA 455607 29 100.0 36 ............................. GCAGGAAAGGGAGAAACTTCATTAGATGGGCTAAAG 455672 29 100.0 34 ............................. AGATGTGCCGGACTTCACCTATGTGCCAGTTAAG 455735 29 100.0 37 ............................. TTCAAAAACGGGCAAGGAGAACAAGAAGCTGATTTTA 455801 29 100.0 29 ............................. ATAATTTCTTTTATCTTTTCATTCTTATC 455859 29 100.0 37 ............................. CGAATAAGTAGAGCTGGGATTATAATAATTTCCTTCA 455925 29 100.0 36 ............................. AAAAATGGATGAAGCAGGGTATGATGCAGAATGGGA 455990 29 93.1 34 ............C..........A..... AAAAGTTCGATTGCTTTTTAATCGTCCAAATATT 456053 29 75.9 0 .......AC......CA......A...CC | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.8 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGACTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGAACGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCCGCCCACCCTCAAAGCCAATAATCTGTTTTAAGGATTTTTCATCTAAAAACCACACCACAATCCTCCCATTTTTTTCATCCAGCGAAAACCGTTTTTGAAATATTTGTAACCGCTCGCATGGATTATATGCAAGAAGAGAGCTATTATTTGTTAGATGCAAAAGAGGATGTTACATAGGTTTGAAGGATGGTGTGCGGGAAAGCGATTTAATTGGAGCACTTGAAGAAGCGCAAACCGGGGCAGTCAAGCTGGATGCAACACGTTACGTGAATACTTTCCCAGAAAAAAACACGCCCATTTCTTAATACCATCGGGGACTGTTCATTGTTCTGGCGCTGATTCGATGATTCTCGAAATAAGCTTATCTGCCTACATTTTTACATTTAAGCTGTGGGATTGGGGACGATTAGGCTTAGACGGCAAACCACGGCCAGTGCATATTGATCATGGAAAAAAAGTGATTAATTGGAACCGTTCTGAAAAATGGGTGGCGGAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 4 1174423-1174058 **** Predicted by CRISPRDetect 2.4 *** >NC_013891.1 Listeria seeligeri serovar 1/2b str. SLCC3954, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1174422 36 100.0 30 .................................... CGGACTAATGATCTATCCCTATTATCCATC 1174356 36 100.0 30 .................................... AATGTGAAAATGCAGCGAGGGGTTGACTAA 1174290 36 100.0 30 .................................... TGATATGTTCGTACCTCAAGTAGTGGGACC 1174224 36 100.0 30 .................................... GGTGTAGTCAAAGTGGAGTTTGGAAATATG 1174158 36 100.0 30 .................................... TGCAATAACATTTTCTGATACTTTTGGCGG 1174092 35 86.1 0 ..................T........-.A..G..T | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : CTGTTTTTTTAAGCTATCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTCAGGACTATTTTCAGGAAAATAATATAAACTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGACATCTGAAACTTTTATTTTTTCTTGACTATTTTCTTGTAATAATCCATGAACTAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACACTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTTTTTTCTATCAACCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGCGTTTTTATACTTATCCACATTAGAC # Right flank : TCCTACTTAATAATAGTAATTAAAACAACCAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGAGAATGCAATCATTTTATTCATAAATATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGCTAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGAGAATCTATAAACCATTTTCCGGTTTCAATTTTAACCAACTCCAAATCTAACAATACTTGATTTTCGGTTTTCTTTTGATTGTCGACTTGAAAAGCAGACCAGGCTCGCACAGTTACTTGGCACTTTTCACCTTCTAAAAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACTTTCACTACATTTTTAGAATCACTCGTTGTTTCCCCTTGTTGAAAGTAAGGAACCATTTCTACAGTGATAAA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //