Array 1 476387-477391 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHTI01000001.1 Salmonella enterica subsp. enterica serovar Virginia str. SA19971529 Virginia_mirahybrid_c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 476387 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 476448 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 476509 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 476570 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 476631 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 476692 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 476753 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 476814 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 476875 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 476936 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 476997 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 477058 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 477119 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 477180 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 477241 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 477303 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 477364 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 493660-495580 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHTI01000001.1 Salmonella enterica subsp. enterica serovar Virginia str. SA19971529 Virginia_mirahybrid_c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 493660 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 493721 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 493782 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 493843 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 493904 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 493965 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 494026 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 494087 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 494148 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 494209 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 494270 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 494331 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 494392 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 494453 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 494514 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 494575 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 494636 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 494697 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 494758 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 494819 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 494880 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 494941 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 495002 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 495063 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 495124 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 495185 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 495246 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 495307 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 495368 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 495429 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 495490 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 495551 29 96.6 0 A............................ | A [495577] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //