Array 1 97797-96320 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCGL01000056.1 Salmonella enterica subsp. enterica serovar Typhimurium strain TT6675 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 97796 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 97735 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 97674 29 96.6 32 .........................C... CAACCAGGCTGGATCGTAACTCCTACCCCCTC 97613 29 93.1 33 ....C.........G.............. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 97551 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 97490 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 97429 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 97368 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 97307 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 97246 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 97185 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 97124 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 97063 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 97002 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 96941 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 96880 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 96818 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 96715 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 96654 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 96593 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 96532 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 96471 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 96410 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 96349 29 96.6 0 A............................ | A [96322] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115910-113929 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCGL01000056.1 Salmonella enterica subsp. enterica serovar Typhimurium strain TT6675 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115909 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 115848 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 115787 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 115726 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 115665 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 115604 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 115543 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 115482 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 115421 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 115360 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 115299 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 115238 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 115177 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 115116 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 115055 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 114994 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 114933 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 114872 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 114811 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 114750 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 114689 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 114628 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 114567 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 114506 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 114444 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 114383 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 114322 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 114261 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 114200 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 114139 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 114078 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 114017 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 113956 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //