Array 1 20552-20185 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZW010000011.1 Listeria booriae strain FSL L7-0035 NODE_11_length_104969_cov_46.870968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20551 36 100.0 30 .................................... GTGTCGAACATGATAAAGATGTTGCGGAGC 20485 36 100.0 30 .................................... ACTGATGGTGGTGTTGAACTGAACATCGAA 20419 36 100.0 30 .................................... CGTCTACTAGCATTTGTGTTTCTTTAACAA 20353 36 100.0 30 .................................... AATCACATGTTAAAACTCGTTACGTTTCGG 20287 36 100.0 30 .................................... GCTTGAAAATGGTGAACAAACGCATTCCAG 20221 36 83.3 0 ..........C...............TG.A..C..A | A [20190] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTTATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGCAATTACCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : TCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCATAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAATGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACACCACATCAATATCGCCAATCGTTCACTTTGCTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATGTTAGAGGCACTTTCCCCAGTATTAACACCATATAATACATC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 24013-24171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZW010000011.1 Listeria booriae strain FSL L7-0035 NODE_11_length_104969_cov_46.870968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 24013 27 100.0 39 ........................... AACCGCTAAGCATCAAACCACCTCATATACAATTTAGAG 24079 27 100.0 39 ........................... GTTGCGAAGCCGTCACGATTCGTTCATCATGATTTAGAG 24145 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 100.0 40 TACCTCAAAACAGAAGAGGACTAAAAC # Left flank : AGTGGATAGCTGGATTAATACTACTGAAAAATATTGGAAAAAAATACGCAGGAAAACATGGCCAAAACATATTGAAAAACTTCATAAATTCATGGTAGGGGAGAACTTGTTTGTTTCTAAGAGAAATGACAGAAATCGTATAGCGCATTTAAATTATTTATCACCAAAAAATAAATATTCGTTATTGTATTTATTCGAGAAATTAAGAGAAATGCTTAAATATGATCGCAAATTAAAGAACGCAGTTACTAAATCATTAATCGATCTTTTAGATAAGCATGGTATGTGTGTTGTGTTTGCTAACTTGAAAAACAATAAACACAGATTGGTGATAGCAAGCCTAAAACCAAAAAAATTGAGACATTTAAGTGGAAAAAAATTAAATGATAGTTATATTGAAACGAATCAAGTTTCAGAAGAGTATTGTAGTATAGTGAAGGCATTATTGGAGGTGTGACGTAGGGTATTTCAATTATTAATAAAAGAATAAAGTATTAAAA # Right flank : CCTCTACTGTGGATAAGTGGGATAAGTTGTTTCTAATTAATCGGAGACTAGTGGCCATAGCATAGAAAATAGAGCATTCAAAGTGATGCTCATCCGATTAGTAGTCAATGATGCAGTATTTATTTGCTAAAACAGTGATATAACCTGTTTTAGTTTCGAAAGCAGTTAGGAGTGCAAAAATGATAAAACTTACTTTTTTCCTCGACTCACGAGACAGTCTAAAACAGTCTGATGAAGTAGAGCTAGAGCTATTCAATTCTATTTTTGACAAGGAGTTCCAAGAAAGCCATCTCTTCGTAACGGAGGAGCAAATAGTTCTTGATGCTTTTTACTTGGAAGACTCGCTAGAACCGTTTCTCAAAAATGATGAGGTTATTCGTTTATTGAAGAAAGATGGTAGCAAGGTGTTACCTATAACACTTCAAGGTGAAGAAATTATTAGTACAAAGAAACTGCCAAGTGTTGATGATTTTTCGAAGATATTCGATATGGGGATATTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCTCAAAACAGAAGAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 129166-128152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZW010000005.1 Listeria booriae strain FSL L7-0035 NODE_5_length_198332_cov_46.819767, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 129165 30 100.0 36 .............................. CTCGTAATTCAGGCGATTAAGCAAACGGATATTATC 129099 30 100.0 36 .............................. CAATTCGTTGTAAAGCGATAGCCAAGCAGTCCCGAG 129033 30 100.0 38 .............................. AGTTTTGCAATATTGGTTTGACTGCCTTGTTATGCAGG 128965 30 100.0 36 .............................. GTCGAACGCTTAAAATAAGGAGGCGGCGAGTATGGC 128899 30 100.0 36 .............................. TTGATTTCGCCCCGACTTTCCTATAGAATGGTTATG 128833 30 100.0 35 .............................. AGATTTTATTAAGTGCAAACACAGCCTCTACTCAA 128768 30 100.0 34 .............................. CTATTTGAACAAGCGCAGTTGGGGTACACTTCTG 128704 30 100.0 36 .............................. GCATCAAATTTGTTTCCCTTCTCATCAACGCCTTGT 128638 30 100.0 34 .............................. GTGATATTTTTGAGGATGAGCAACAGGACATTAC 128574 30 100.0 38 .............................. ATACACCTTCGAGTTGGTCCTTATCAAAAAAGTTCTCA 128506 30 100.0 36 .............................. AAGGTTCGGAAGCATCATGTTGGACATCAAACGGCA 128440 30 100.0 36 .............................. TCAAATAAGAACGGTCGATTTCGTCGTAGCAAATGA 128374 30 100.0 36 .............................. ACATTCGCTTTAGACACAGCACCCGATTCGTTAGCC 128308 30 100.0 34 .............................. TCTTCTGACCTTCCACTAGCCCCGTATGCACGGC 128244 30 100.0 34 .............................. CCGTGACAGTTCCCGTTAAAAGCGCTGTGGATTC 128180 29 86.7 0 .............C...A.....-.....C | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GCACAAAGAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGTATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGCTAGTTAATAAATATACATCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGGTCAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGAGTTTTGTTAAGCGTTGATGTGATTGGATTTGAGGCTGTTTTTGGAGTTCGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGAGAGTAGGCGTTGATGGGGTACCT # Right flank : CCTTTTATGATTCTAGCAGATATTCTAACCATAGAAATAAATTGAATCAAATCAAATCAAATCAAATCTTCTTTTTAGAGGTTGCTGACAATATGGTTAACGATAATTAATTGGTGAGACTGTGATTGGAACTGCATATGAGAAGTTTGAAAGAGAAGCTTTAAATACACATATTAGGAAAAATGATATTAAGTGAGAAGCATCAATCGGTACATAAAAAAATCTTAAAGCAACTAATGCTAAGTGTATAACTTCAAAAAAGAAGGAATTTAGAGGTACTTTTAGTCTATTGTATAAGAAGTTACAGTTCAAGCTGATGCTGTTTGCGGTGCAGATGGAAGTTTTTCTTCATGAGGAGCGAGCGGGTTACCGTTAGAACTTTCGAAGGTAGCGTTTCTATGAGTCTAGGCCGTTAAAACTTTGATTATGTTATCATTGAACGATGAGCGAGATAGTGAAGGCAATATATTTAATCTTTGTGAAAACGTTTGCGATAACAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 77260-78601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZW010000009.1 Listeria booriae strain FSL L7-0035 NODE_9_length_123345_cov_45.305929, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 77260 30 100.0 36 .............................. ATAATTATAACCTCACATCGCCCCTTGGTATCTCTA 77326 30 100.0 34 .............................. TTAGTCTGTAACGTATAGTGCTTTTCTGCCTTAT 77390 30 100.0 35 .............................. ATGTGATGGCTTGGGCTGGTGGGCTAGCTGGTGCA 77455 30 100.0 36 .............................. GCATATTGAGCAATTAGAAAAAGTGGAAGATGAATG 77521 30 100.0 35 .............................. TTAAAAATAGCGCTACTCAGCGCTTTCGTTTTTTG 77586 30 100.0 36 .............................. ACTTCTATCACTGTAGTGTAATTTACTCATTATTTA 77652 30 100.0 36 .............................. CTGATGGATTAGTAAGCATACACTTTCAAATTGATA 77718 30 100.0 36 .............................. TTTTTTAAACTAGATGGGTCAATGCGAACTACCTCA 77784 30 100.0 36 .............................. CCCTCTGCCTTCTGACAAGTTGGTAAAAAAGATACC 77850 30 100.0 35 .............................. GTGGATATTGCAATCAATCATGATTTGAAAGCGAT 77915 30 100.0 36 .............................. CCATTTTCCTAACAAGGAAAATAATACTTGTTTTTT 77981 30 100.0 35 .............................. CGCAAACTTGCGTTTTGTTTGTCGTCCTTCTTTCC 78046 30 100.0 36 .............................. AAATCCAAATCTACTCACCTCCTTCCAAATAAAAAA 78112 30 100.0 36 .............................. GCATGACATTGTATAATAAGCGCTATGAAGTCATCT 78178 30 100.0 36 .............................. TTCTTAGTTTCGTATTTTTGTATCGAAGCCATGTTC 78244 30 100.0 35 .............................. TGTCTTGCTTACCGTCTAAGAAGATACCCTTTCCG 78309 30 100.0 34 .............................. GTGGAAGAACTAGAAAAAGGATATATGGAACGCA 78373 30 100.0 36 .............................. GAAAAAAGTGGTGATACAGTTAGCATATGGGTTGAC 78439 30 100.0 37 .............................. TTTGCTAAATACGGTATTTGAGAGATACGAGGCGCAT 78506 30 100.0 36 .............................. GATTACGATGCATCAAATCATTTTATTGCCAGTATT 78572 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTGGATAAAGAACGTCTCGTTCAGAAAACAAAATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATCTTTGTTATGCATTGGTACTAAAGGGGTTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGGGCAATAATTTAGAATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATACTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAGTATCCATTAGTACTGAACAATGGATACTAACCCTCTTAATCTATTGGCCTCTCTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTGACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTTGTGTTAAGGATGACCGTTTTCGCATAGTATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGCCCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 18394-21584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZW010000017.1 Listeria booriae strain FSL L7-0035 NODE_17_length_71421_cov_46.543229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 18394 30 100.0 37 .............................. AAAATATAGCCTCAAATAGCGGTCATATCGTTAGTTT 18461 30 100.0 35 .............................. TACCCTGGTTCAGTTGGAAGAGTACAGAAATCCGA 18526 30 100.0 36 .............................. AATATAAACAGTTAGCTACAGATGAGTACGTAACAC 18592 30 100.0 37 .............................. GTCGTTGGAATTGGTCTTTAGGGACTGGTAACATTTC 18659 30 100.0 36 .............................. CGGCTACTAGTTCAATTTGCTCTCTTTTCAATACTG 18725 30 100.0 36 .............................. GTTGTATTTGATGATTATGGGTGGATTTTATACGAC 18791 30 100.0 35 .............................. ACCTTTGCCTACTTCGCAATTAAATCCGCTATTGA 18856 30 100.0 38 .............................. AAACGCATCTTGATTAGTCAACACAACTTTTGTTAAAG 18924 30 100.0 36 .............................. GTAGTCGCTGGAGTTGGGCTATTGATGATGTCGCTT 18990 30 100.0 34 .............................. TGCGTTGCCCTCCTCTCTTTAATAATTCTTATTA 19054 30 100.0 36 .............................. GATGACACCTATGAGGTAGAAGTTGAGAAGCTAGAT 19120 30 100.0 38 .............................. ATTATTTTTGATGTCAGCTCTATATTATCTTGGTTTTC 19188 30 100.0 37 .............................. AAAAGATGTCCGGATTTTAAAAGAAGCAAGAGTGTAT 19255 30 100.0 35 .............................. ACGTTTGCAGGAGCAACTCCGCTGAAAACTAACTC 19320 30 100.0 37 .............................. AAAACTGTACATTTGCTATAAGTGCGGACAAGTTAAA 19387 30 100.0 37 .............................. AGCACATCCAAAGACGGCGATTTCGAGTTCCATTACC 19454 30 100.0 34 .............................. GCTGATACCACTGCGCCTGTCCCAATTGCGAATA 19518 30 100.0 37 .............................. TAAGTATTCTCCTTTGCAATTAAATGAAACGCTCCAT 19585 30 100.0 36 .............................. AAATACGCTCTTTATCTTTGATAAAGTCGACTTTTG 19651 30 100.0 37 .............................. TTACTTTTCTCAAATCTTTATTTTGACATGCGATTTT 19718 30 100.0 36 .............................. ATCGATAGTTCCCCATTCACGTCCATCATCGGAGTC 19784 30 100.0 34 .............................. GAAGGCGGACAATACCTTCAACCGAATATTTTTC 19848 30 100.0 36 .............................. AGTAGGTTTTCTTTCTTCGCTTTGCCTGATATCTCA 19914 30 100.0 37 .............................. AGCCCTAAAATCTGGTTGTACGCTTCTTTAGTATTTT 19981 30 100.0 38 .............................. TTATATCCAAGCGCCAATTCGGACACTTTACCCTTTTG 20049 30 100.0 34 .............................. CAAGACAAAGGGTAAGCCCAAGCACAAACAATAC 20113 30 100.0 36 .............................. CTTAATGTCGTAACATGACCCTTTCGCTTTTCCACT 20179 30 100.0 35 .............................. TCTTGTACATTGAAAATGTACACGTTGAACTCTAA 20244 30 100.0 36 .............................. AAGGATACTTAAAGAAACTAGGCCTGTTAAATCATC 20310 30 100.0 36 .............................. GATGATGAATAATGACTGACTCTTTTTGCCCTTGTC 20376 30 100.0 35 .............................. GACAAACTAATTGATTCTAGATTGTTGATTCTCGC 20441 30 100.0 35 .............................. AGATAATTACAAGGAATAGTCGTGAAACAGACACA 20506 30 100.0 37 .............................. TTGGAAAAACAGGTATCCAAGAAGGCGGAGCCGGTCT 20573 30 100.0 37 .............................. TCCATAGCAGGCTCGTATTTATCCGCTAAGAATGTCT 20640 30 100.0 36 .............................. ATTGATTTTCGTTACGTGACAGCGGCAACCAGCCCT 20706 30 100.0 36 .............................. TTTGTTAGTGTCGAATTAATCGCGTAGTTGCTATTT 20772 30 100.0 36 .............................. ATCGCAATTACTGCTGCTATAACTAGCGTGATTGGA 20838 30 100.0 36 .............................. ATAACAACTTCCTGATTTAACATATCATGTTCTTTT 20904 30 100.0 36 .............................. AAAAGTGTGGGAGAAAGCCGTGGAACCAATAATGAT 20970 30 100.0 36 .............................. AGTGATGATTGGTTGGGTCACCCTGACCTCGGTTGA 21036 30 100.0 36 .............................. TCTATCCAGTCGATAAATTTACGCATTATGTCCTCC 21102 30 100.0 36 .............................. CTTGAAAGCATCGGGCTGTATTATAGGTGCCTTCGC 21168 30 100.0 36 .............................. AGAAGAAAACGGCAGAAGAACGCAAGGTAGAGCGGT 21234 30 100.0 34 .............................. GAAGGAGGCATTACATTTCGAGAAGATCGTTATG 21298 30 100.0 35 .............................. TCTTTCATAGAATTTTGATAAGCACCAGGAACCTT 21363 30 100.0 36 .............................. GATGGACGAATGACGAGTTCCACATATGAGGGAATA 21429 30 93.3 35 .................A....G....... CCAATCCACCAATTTTCAGTTTTACGGCGTTGCTC AATA [21443] 21498 30 86.7 27 .........C...C...A......A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [21555] 21555 30 73.3 0 .C....CC.A.....C.A.....CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 49 30 99.0 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAATGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTAGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCGATCCAATTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCATGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCTGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //