Array 1 461262-462429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPYL01000001.1 Yersinia similis strain MW109-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 461262 28 100.0 32 ............................ AACACGTTGGATGAAGCACAACAATTAATTAT 461322 28 100.0 32 ............................ ACCTCGTTCACCTGAGCGCTTGACTTCAATAT 461382 28 100.0 32 ............................ GTCTCCCAAGTCTTAACAGAATGGAGGAATAC 461442 28 100.0 32 ............................ TATGTAAGCTCCTACATTGAATTTTTAGAAGT 461502 28 100.0 32 ............................ TAAGTGGGCATTATCGATGACCGGAATCACAT 461562 28 100.0 32 ............................ CGAGCCAAAACTTGATGAAGACATGGAAGACT 461622 28 100.0 32 ............................ GAATCAATCAAGAAGGAGAAGCAGGGTAACTA 461682 28 100.0 32 ............................ ATCAATGAAGTGAATGATCGGCTGGCAATCTG 461742 28 100.0 32 ............................ AGTGTGATGGAGATATATTGATGAAACACGCC 461802 28 100.0 32 ............................ CTCACCATCCGACGTCATGACAATTATTCCAT 461862 28 100.0 32 ............................ TCCATCAATACCAGACCGATAACGCCTACTGG 461922 28 100.0 32 ............................ TTCTGTTGAAAACCCCAACTCTTTCATTGAAT 461982 28 100.0 32 ............................ ACATGGAGACAGTGGCGAAAGAGAATGCAATC 462042 28 100.0 32 ............................ TCCTGAATTAAATAATACCAACAAGCATCCAT 462102 28 100.0 32 ............................ AAATAATGCAGTAGTAATAGAAAATCCTGCTT 462162 28 100.0 32 ............................ ACCAAAATCACCCTTGGCCTTGCTAGCGTCAG 462222 28 100.0 32 ............................ TTTGTGCTGCTAGTAGTTTGCAACTCAATAAT 462282 28 100.0 32 ............................ CGCTGGATATCGACCATCAGAGGATCAAGTGA 462342 28 100.0 32 ............................ TGTACAGCAGGCGATGTTTATTGCTCAAGCAG 462402 27 85.7 0 .................T...CC.-... | T [462428] ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGGCTAGAAAAATCAATCGAGGTGATGAACCCTGGCAGGTAGACTATCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCGCACCAAGCAATGCCGCACCTAATCCGCAATAGACGATACCGCGTAACCGTACCAATTAGCCAAGAGTAGAGACCCACAGCCCCGGCAATGGAAGCAATTTGGCTGGCGGTAACCAACCGGAACCCTAAATAGCGCCCATTCCAATAAACGTCAGGTCGATGAGCGCCAGCTGTTTTTTAAATTTGCCCTGGACAGGCCAGAAACATTGGCCGCAGCTCCGCCGTTCTCCTCAGAAGAATAATCATTAGGATCCGGTTACATCCCCATAGATTCTTGTGACCCTCTTTTTTCCACTATTACTAACTTATTGATTTTTATGCTTCTCAGGTGTTTCACTAAAAAAAGGGTTTTTACGCATTTTTCGCAATTGCTAATTGATAAATATCAGCTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTATCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGTTCAGGGCTAAGCGCTGAACGGCGATGCTGTAACCAGCGCTGTTGCTCACGGTCATTCAAGGTATTCGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCGGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCGGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGTGAATGGCTCCGCTTGTGCAAACAGCGCGACCACTCTTTCACGCACCTGTGGGTTTTGACGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15894-17066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPYL01000048.1 Yersinia similis strain MW109-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15894 28 100.0 32 ............................ CTCGGATAAAATGTAATTTGCTAACTTTACGT 15954 28 100.0 33 ............................ CGGTTGGATATAGACCCAAAAGGAGCACTAGAT 16015 28 100.0 32 ............................ TTCTGGTAGGTACTTGGCCGCTTCGTGACAAT 16075 28 100.0 32 ............................ CAGACTGGCGGGATCATCAGTGACCGCAAGGC 16135 28 100.0 33 ............................ CGTGACAATGTGAAAATCGGGCACAATGTCAAT 16196 28 96.4 32 .C.......................... TGCATGGATATTCTATGACTTAGTAACCAATG 16256 28 100.0 32 ............................ TAGATGATGGAGCGTTCAGTTATGCAAATGAT 16316 28 100.0 32 ............................ TCATCAATACGATTAAGCATTAAGCCGGTTGA 16376 28 100.0 32 ............................ AAGGTTGACTTGATGTACACACTGGCCTTCCT 16436 28 100.0 32 ............................ CTACCGCGATGGTTGAGTGTTGGGTTGAAGAT 16496 28 100.0 32 ............................ TACACCACCTCCCAGCTGAACTCTCCGGAGAT 16556 28 100.0 33 ............................ AACAACAGGTTGGCGGGAGCTAGGTAATATCAA 16617 28 100.0 32 ............................ TGCGTTATAGTCTGATAATGAGATAATATTGT 16677 28 100.0 32 ............................ TTAACTACGTGCCCAACCCGCTGACCGGGAGG 16737 28 100.0 32 ............................ AATTAAGTCAACCACACGCAAGAATTGCTTAT 16797 28 96.4 33 ...........................A CGGTCATAAACCAAAGGGCATATTTTTTGTACC 16858 28 96.4 32 ...........................A TTCAGCAGCAACGCCAGCGCCACGATTCCCGA 16918 28 96.4 32 ...........................A ACATAGTGACATCGCCATATTCGAGGCTAGCC 16978 28 92.9 32 A..........................A AATCTATCTGCTAGTCAATATCTCCCGCGTAA 17038 27 85.7 0 ...................A..C.-..T | AA [17059] ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : ATTGCTGCCCGCGGCGCTGGAGGGTGGCCAGAACTACACGGTGTAGCACCAGGTGGATCACCACAGAAATCAATAAGATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCATTGCTCCTTTAAAACATCAATCTGACGAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCAAAGGGGGAGACATATTTATATGCTGTGGTTTATGACATGGTTTGTGGGATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTTCATTGTAGTTACCGGTGGTCTAAAAAAAGGGTTTTTTCCCTATTAGCGAAAGAATTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TCCTGGACCATGCTCTGATGCTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGATAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAAGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAGCTGCATATGTGTTGGCTGCTTTCGTCCTCCCAGTAACTTACTGGCGTAAGCTCTTGGGGATTTACTCAGTTGCCGCCTTCTTGCAACTCGAATTATTCTGAGTATAGAGAGAGTTATTTTTTGGAATAATATCCACTTGGTACCTAAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCTCTAAGGAGTTTTATTTCCATGGAAAATGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGGGGGCGAGTTGAATATGTCACCGATGAAGGTAAAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //