Array 1 24003-22264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTT01000002.1 Pseudomonas aeruginosa strain AZPAE14869 AZPAE14869_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24002 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 23941 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 23880 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 23818 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 23757 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 23696 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 23635 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 23574 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 23513 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 23452 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 23391 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 23330 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 23269 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 23208 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 23147 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 23086 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 23025 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 22963 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 22902 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 22841 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 22780 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 22719 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 22658 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 22597 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 22536 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 22475 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 22414 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 22353 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 22292 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34302-33175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTT01000002.1 Pseudomonas aeruginosa strain AZPAE14869 AZPAE14869_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34301 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 34240 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 34179 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 34118 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 34057 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 33996 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 33935 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 33874 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 33813 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 33752 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 33691 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 33630 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 33569 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 33508 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 33447 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 33386 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 33325 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 33264 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 33203 28 79.3 0 A..........A..C.....-..A....T | C [33194] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //