Array 1 1231886-1234944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051413.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM 20749 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1231886 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 1231947 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 1232008 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 1232069 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 1232130 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 1232191 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 1232252 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 1232313 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 1232374 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 1232435 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 1232496 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 1232557 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 1232618 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 1232679 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 1232740 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 1232801 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 1232862 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 1232923 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 1232984 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 1233045 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 1233106 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 1233167 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 1233270 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 1233331 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 1233392 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 1233453 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 1233514 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 1233575 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 1233636 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 1233697 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 1233758 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 1233819 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 1233880 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 1233941 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 1234002 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 1234063 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 1234124 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 1234185 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 1234246 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 1234307 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 1234368 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 1234429 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 1234490 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 1234551 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 1234612 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 1234673 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1234734 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1234795 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1234856 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1234917 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1251490-1253960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051413.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM 20749 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1251490 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 1251551 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 1251612 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 1251673 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 1251734 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 1251795 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 1251856 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 1251917 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 1251978 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 1252039 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 1252100 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 1252161 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 1252222 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 1252283 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 1252344 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 1252405 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 1252466 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 1252527 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 1252588 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 1252649 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 1252710 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 1252771 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 1252832 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 1252893 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 1252954 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 1253015 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 1253076 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 1253138 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 1253199 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 1253260 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 1253321 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 1253382 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 1253443 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 1253504 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 1253565 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 1253626 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 1253687 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 1253748 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 1253809 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 1253870 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 1253931 29 100.0 0 ............................. | A [1253958] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //